Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35690 83 / 6e-18 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17080 77 / 5e-16 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 77 / 6e-16 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 70 / 3e-13 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 62 / 8e-11 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35720 61 / 2e-10 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35680 59 / 2e-09 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35660 47 / 6e-06 Arabidopsis protein of unknown function (DUF241) (.1) AT1G76210 45 / 3e-05 Arabidopsis protein of unknown function (DUF241) (.1) AT3G51400 44 / 8e-05 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041835 [exp] 561 / 0 AT4G35690 98 / 3e-23 Arabidopsis protein of unknown function (DUF241) (.1) Lus10028381 [exp] 81 / 4e-17 AT4G35690 173 / 1e-52 Arabidopsis protein of unknown function (DUF241) (.1) Lus10005000 [exp] 72 / 6e-14 AT2G17070 99 / 4e-24 Arabidopsis protein of unknown function (DUF241) (.1) Lus10041833 [exp] 67 / 2e-12 AT4G35680 130 / 1e-34 Arabidopsis protein of unknown function (DUF241) (.1) Lus10028380 [exp] 65 / 1e-11 AT4G35680 129 / 4e-34 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023962 [exp] 61 / 2e-10 AT2G17080 214 / 4e-69 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025126 [exp] 56 / 1e-08 AT2G17080 218 / 1e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023964 [exp] 54 / 3e-08 AT2G17080 223 / 8e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023951 [exp] 53 / 1e-07 AT4G35210 216 / 4e-70 Arabidopsis protein of unknown function (DUF241) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G103800 [exp] 181 / 1e-54 AT4G35720 165 / 1e-48 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103700 [exp] 110 / 2e-27 AT4G35690 179 / 3e-54 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103600 [exp] 105 / 4e-26 AT4G35690 171 / 6e-52 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103400 [exp] 100 / 7e-24 AT4G35690 145 / 1e-41 Arabidopsis protein of unknown function (DUF241) (.1) Potri.007G059700 [exp] 96 / 2e-22 AT4G35660 117 / 7e-31 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182400 [exp] 86 / 5e-19 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249100 [exp] 82 / 1e-17 AT2G17080 149 / 1e-43 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 82 / 2e-17 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012200 [exp] 81 / 2e-17 AT2G17080 130 / 2e-36 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182700 [exp] 81 / 3e-17 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF03087 [flax] [poplar] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10028382 pacid=23166082 polypeptide=Lus10028382 locus=Lus10028382.g ID=Lus10028382.BGIv1.0 annot-version=v1.0 ATGTTGAAGATTGCATCCCCAAGGGCTTCCTTCTCCTCCTCCACAAAGCTAATCCGTTCCCGCAACCTTCGATCTGTAAGCTTCCCAGCTCGCTCGAGCT CCAACGTTCAGAAACTCGAACAGGAGCTCGACAAGTTGATAATAAGCTCTTCGCTCGAGCCGCGGTCGCCATCGTTACAACTAGACCAAGGCATCATCGC CCGCCTCTCGAGCGTTTCGGAGGTCTACAGACGCATAGGCGAGCTACTGAGCCAGCCTGGGGCCCACCAAGCATTGACTTCGCACGAAGACAGTCAGTGG GCCAACCACACGTCTGATGACCTGATAAGGTATCTGGACGTGTGTGCCAACACACGCGACACTCTACTGGCTATGCAGGAGAGCGCCAGGGATCTCCTGT CGTCCCTTCGACGGAGCAGCAAGTCGAAGGGATCAGTATCGATCGAGTGTGGGGTCGTCGAGACCTGTATAAACAGCTTCCTAGTTTTGCGAAAAAACGC AAAAAAAGAAGCTGCTAAATCCCTAACCAGCCTAAAGCAGGTTGGGGCTAGATTAGACAATTACGGTCGCGTAGGGTTGTCAGGTAACAACCTTTACACG GCCGCGACAATTGGAGCTGTGAGAGAGGCGAGTTACCACACGGTTTCAGTTTTCGGAGAGCTGCTCTCGCGCCTCTCAGCAAAGTCTTCCAAGACCGGAG GGAAGTGGTCGTTTGTGGCGAAGCTGGTGCATATCAAAGGGTGCGAATTCGAGAGTGGTCATAAGAAGAAGATGAATGAGTTGGAGAGCGTGGTGGCAGT GCTACATGAGTTGTGCTATTCGATCAAGGACTCAGAGGCGACAGAGGGTGGCGGCTCCGGCCGTGATTATATGGCGGTGGTTGAATTGGCACAGATGAGG TTGGAGATATTGGATAGGAGTATTGGAGGAGTGGAGAAGGAGCTTGAGTGTTTGTTCAAGCGGTTAATTCAAGCTCGAGTTTCCCTCCTCAACTTGCTTT CCCACTAA
AA sequence Show only first row Show all	>Lus10028382 pacid=23166082 polypeptide=Lus10028382 locus=Lus10028382.g ID=Lus10028382.BGIv1.0 annot-version=v1.0 MLKIASPRASFSSSTKLIRSRNLRSVSFPARSSSNVQKLEQELDKLIISSSLEPRSPSLQLDQGIIARLSSVSEVYRRIGELLSQPGAHQALTSHEDSQW ANHTSDDLIRYLDVCANTRDTLLAMQESARDLLSSLRRSSKSKGSVSIECGVVETCINSFLVLRKNAKKEAAKSLTSLKQVGARLDNYGRVGLSGNNLYT AATIGAVREASYHTVSVFGELLSRLSAKSSKTGGKWSFVAKLVHIKGCEFESGHKKKMNELESVVAVLHELCYSIKDSEATEGGGSGRDYMAVVELAQMR LEILDRSIGGVEKELECLFKRLIQARVSLLNLLSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35690			Arabidopsis protein of unknown...		Lus10028382 [exp]	0	1
					Lus10036026 [exp]	1.0	0.8554
AT3G53010			Domain of unknown function (DU...		Lus10042635 [exp]	2.4	0.8253
					Lus10041324 [exp]	10.1	0.7298
AT5G15240			Transmembrane amino acid trans...		Lus10030683 [exp]	10.2	0.7917
AT1G49570			Peroxidase superfamily protein...		Lus10023858 [exp]	10.7	0.7884
AT3G50330	bHLH	HEC2, bHLH037	HECATE 2, basic helix-loop-hel...		Lus10005710 [exp]	12.0	0.7941
AT1G65680		ATHEXPBETA1.4, ...	expansin B2 (.1)		Lus10027223 [exp]	14.5	0.7841
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Lus10009417 [exp]	15.0	0.7398
AT1G02810			Plant invertase/pectin methyle...		Lus10029866 [exp]	15.7	0.7266
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10024341 [exp]	16.5	0.7246

Compare expression of checked genes

Lus10028382 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.