Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35730 316 / 2e-103 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G34220 230 / 7e-69 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G25420 208 / 1e-63 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) AT2G19710 201 / 2e-56 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G29440 198 / 2e-55 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G13340 135 / 4e-35 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G79910 125 / 7e-32 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT2G14830 120 / 1e-29 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G52315 114 / 3e-28 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G32350 109 / 2e-25 Regulator of Vps4 activity in the MVB pathway protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041836 [exp] 560 / 0 AT4G35730 423 / 2e-145 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10028724 [exp] 236 / 3e-72 AT1G34220 417 / 1e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10006061 [exp] 235 / 6e-72 AT1G34220 417 / 2e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10000978 [exp] 218 / 6e-62 AT2G19710 308 / 6e-89 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10040542 [exp] 213 / 2e-60 AT2G19710 309 / 2e-89 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10041442 [exp] 182 / 3e-54 AT1G25420 270 / 6e-90 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Lus10041468 [exp] 165 / 8e-46 AT1G13340 239 / 1e-74 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10034303 [exp] 155 / 2e-42 AT1G13340 243 / 5e-76 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10034330 [exp] 136 / 2e-36 AT1G25420 218 / 3e-69 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G059800 [exp] 389 / 1e-131 AT4G35730 385 / 7e-130 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.013G117100 [exp] 238 / 6e-72 AT1G34220 357 / 2e-115 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.019G087400 [exp] 235 / 3e-71 AT1G34220 357 / 5e-116 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.008G121300 [exp] 223 / 1e-69 AT1G25420 361 / 3e-125 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Potri.006G149800 [exp] 223 / 1e-63 AT2G19710 300 / 3e-86 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.010G127000 [exp] 152 / 4e-41 AT1G13340 268 / 1e-85 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.017G113900 [exp] 140 / 2e-38 AT1G13340 211 / 9e-66 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.013G135700 [exp] 135 / 5e-34 AT2G14830 228 / 2e-67 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.004G100900 [exp] 134 / 1e-33 AT1G13340 223 / 1e-66 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.004G038600 [exp] 124 / 2e-30 AT2G14830 175 / 3e-48 Regulator of Vps4 activity in the MVB pathway protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03398 [flax] [poplar] Ist1 Regulator of Vps4 activity in the MVB pathway
Representative CDS sequence Show only first row Show all	>Lus10028383 pacid=23166049 polypeptide=Lus10028383 locus=Lus10028383.g ID=Lus10028383.BGIv1.0 annot-version=v1.0 ATGACCGTCGCTAGTGTCGCCGTTTCCTCCTCCAAGAAGTTGGTGAAGTTCACTCTTTCAATCTTCCGTCCCCGTTTCAATTCTTCCAAATGTAAAACGG CGGCCAAGATGACGGTGTCGAGGATAAAACTGTTGAAGAACAAGAGACAGGCGACTGTGAGGCAGATGAGAAGAGACATTGCTTTGCTTCTTCAGTCCGG CCAGGATGCCACTGCTCGTATCCGGGTTGAGCATGTTATAAGAGAACAGAACGTTTTGGCTGCAAATGAGTTCATCGAGCTCTTCTGTGAGCTAGTAGTG TCCAGACTTCAAATCATCGCAAAGCAAAGGGATTGTCCAGCGGACTTGAAAGAAGGGATTGCGAGCTTGATGTTTGCAGCCCCAAGGTGCTCCGAGATCC CTGAACTACTCGCACTGAAGGATATTTTCGAGAAGAAGTACGGAGCTGATTTTGTGGGTGCTGCAGTTGATTTGCGACCTAGCTGTGGTGTTAATCGTAT GTTGATTGACAAGCTCTCCGTTAGAACACCTAGTGGTGAAGTGAAGTTGAAAGTTTTGAAAGAAATTGCGAAAGAGCACCAGGTTGAATGGGATACAACC GAGTCCGAGGAGGAGCTCCTTAAGCCTCCGGAAGAGCTTATAGATGGACCTTCCTCATTCGCCGCTGCTTCCACCTTTCCTGCTAAGCTACCTCCTAATA ACTCTTTTCAGGCAGATAAACCAACCGTCAGATCAACTAATGAAGTTCAACCTGGTAGCACTTATTTTGGAGATGCTGCAACTGCTGCTGATGCAGCTGC AAAATGTGCAAAGCAAGCAATTGAAGCTGCACAAGCTGCAGCTTACTTGGCTAATAGGGGCTCGAACCAGACCTCGGCGTCCAATCGTGATGTCAGATTT GAACAAACACATCCTGACAATTCTTCTCGGTTCGGCATGCCAATGAACCTTCAGATGGATTCAAATCAGAGCTTTAATGGGTCTCCTTTTCCAAGCAGTG AAGGGACCAGACCTATACAGGGGCATTCCGGCCGTGTCAATAGGAGGCACAGCTACAATGAGGCACCACCAACAACACGGATCGAACCTTCATACAGAAG ATACAGCTACAATGACAGGTACGATGACCATGGGACAAATGATGGTGAAGGCTCCTCTCCACGTTCTGAACTCTTGTTTGACGAATCAGAATGCGATGAA GAGATTGAAATGGAAGAACCAAGTGGCAATGCTCGTATACCGCCTCCTATGCGACCTCCACCGCCAGTTCCTACAGAGCATCATCCCAAGTTGCCAGACT ACGATGAGATTGCTGCACGCTTCGAAGCTCTGAAATGCCGCAAACCAAAGGCTTAG
AA sequence Show only first row Show all	>Lus10028383 pacid=23166049 polypeptide=Lus10028383 locus=Lus10028383.g ID=Lus10028383.BGIv1.0 annot-version=v1.0 MTVASVAVSSSKKLVKFTLSIFRPRFNSSKCKTAAKMTVSRIKLLKNKRQATVRQMRRDIALLLQSGQDATARIRVEHVIREQNVLAANEFIELFCELVV SRLQIIAKQRDCPADLKEGIASLMFAAPRCSEIPELLALKDIFEKKYGADFVGAAVDLRPSCGVNRMLIDKLSVRTPSGEVKLKVLKEIAKEHQVEWDTT ESEEELLKPPEELIDGPSSFAAASTFPAKLPPNNSFQADKPTVRSTNEVQPGSTYFGDAATAADAAAKCAKQAIEAAQAAAYLANRGSNQTSASNRDVRF EQTHPDNSSRFGMPMNLQMDSNQSFNGSPFPSSEGTRPIQGHSGRVNRRHSYNEAPPTTRIEPSYRRYSYNDRYDDHGTNDGEGSSPRSELLFDESECDE EIEMEEPSGNARIPPPMRPPPPVPTEHHPKLPDYDEIAARFEALKCRKPKA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35730			Regulator of Vps4 activity in ...		Lus10028383 [exp]	0	1
AT4G35730			Regulator of Vps4 activity in ...		Lus10041836 [exp]	1.4	0.9769
AT3G15550			unknown protein		Lus10035906 [exp]	4.0	0.9674
AT4G13370			Plant protein of unknown funct...		Lus10043255 [exp]	4.2	0.9661
AT4G13370			Plant protein of unknown funct...		Lus10019398 [exp]	7.5	0.9638
AT5G26910			unknown protein		Lus10037725 [exp]	8.8	0.9592
AT3G44530		HIRA	homolog of histone chaperone H...		Lus10004893 [exp]	9.4	0.9224
AT1G02730		SOS6, ATCSLD5	SALT OVERLY SENSITIVE 6, CELLU...		Lus10010024 [exp]	10.2	0.9591
AT5G27550			P-loop containing nucleoside t...		Lus10004487 [exp]	11.0	0.9604
AT3G21620			ERD (early-responsive to dehyd...		Lus10030024 [exp]	11.0	0.9619
AT1G02730		SOS6, ATCSLD5	SALT OVERLY SENSITIVE 6, CELLU...		Lus10025046 [exp]	14.5	0.9497

Compare expression of checked genes

Lus10028383 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.