Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51390 331 / 1e-112 DHHC-type zinc finger family protein (.1) AT4G24630 70 / 4e-13 DHHC-type zinc finger family protein (.1) AT3G48760 68 / 3e-12 DHHC-type zinc finger family protein (.1) AT3G56930 66 / 8e-12 DHHC-type zinc finger family protein (.1.2) AT5G50020 66 / 1e-11 DHHC-type zinc finger family protein (.1.2) AT5G05070 65 / 1e-11 DHHC-type zinc finger family protein (.1) AT2G14255 66 / 2e-11 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT2G40990 64 / 3e-11 DHHC-type zinc finger family protein (.1) AT3G56920 63 / 5e-11 DHHC-type zinc finger family protein (.1) AT5G41060 62 / 2e-10 DHHC-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041837 [exp] 583 / 0 AT3G51390 369 / 2e-127 DHHC-type zinc finger family protein (.1) Lus10012096 [exp] 78 / 1e-15 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10010447 [exp] 77 / 4e-15 AT3G56930 451 / 3e-152 DHHC-type zinc finger family protein (.1.2) Lus10028687 [exp] 73 / 6e-14 AT4G24630 563 / 0.0 DHHC-type zinc finger family protein (.1) Lus10008037 [exp] 70 / 7e-13 AT5G20350 905 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10028737 [exp] 68 / 2e-12 AT4G24630 582 / 0.0 DHHC-type zinc finger family protein (.1) Lus10038108 [exp] 68 / 2e-12 AT5G20350 839 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10038990 [exp] 68 / 2e-12 AT5G05070 466 / 1e-163 DHHC-type zinc finger family protein (.1) Lus10027274 [exp] 67 / 4e-12 AT5G05070 468 / 2e-164 DHHC-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G104700 [exp] 408 / 6e-143 AT3G51390 374 / 1e-129 DHHC-type zinc finger family protein (.1) Potri.007G060100 [exp] 402 / 9e-141 AT3G51390 341 / 1e-116 DHHC-type zinc finger family protein (.1) Potri.005G104800 [exp] 298 / 6e-101 AT3G51390 274 / 1e-91 DHHC-type zinc finger family protein (.1) Potri.016G025100 [exp] 78 / 1e-15 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2) Potri.018G121200 [exp] 74 / 3e-14 AT5G20350 951 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.006G061800 [exp] 73 / 8e-14 AT5G20350 959 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.005G195300 [exp] 68 / 2e-12 AT4G24630 555 / 0.0 DHHC-type zinc finger family protein (.1) Potri.006G027400 [exp] 68 / 3e-12 AT3G56930 439 / 9e-151 DHHC-type zinc finger family protein (.1.2) Potri.006G027500 [exp] 67 / 5e-12 AT5G05070 456 / 9e-160 DHHC-type zinc finger family protein (.1) Potri.002G065500 [exp] 66 / 8e-12 AT4G24630 543 / 0.0 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10028384 pacid=23165995 polypeptide=Lus10028384 locus=Lus10028384.g ID=Lus10028384.BGIv1.0 annot-version=v1.0 ATGGGGCTTCTCGATCCATGCCGCAACGCCTTCAATCGAACACTCGATCGATTCCTTGATGCCTTCCCTTGTTTAGCCGATCCGGGGAGGAGATCTTCCT TGGGATTGAGATTGGCATTGGTGTTGCTTCATCTTCTCTATGCCGGAGTTCTCTTTCTCTTCGACACTGATTTGATTGAGAAAGCAAAGCAACAGCCTTG GTATACTGCTCTGTATGCCTTGTTGTTCGTCACAACGTTGGTTCAGTACTTCATTACTTCCAGTACGTCTCCGGGCTATGTCATTGATGCAATGAGGGAC CTCAATGAGAAAAATGCAGTTGCTAGGCAGGCCGCAATGACCTCAAAACAGCCTGCTTCAAGTAAAAATGGGAGCTTTGTTATAACCATTGACGCTGCTC AACAAGGTAGACTGCTTCACGGAAGTCATGTAATGCCATGGACAAAGCTGGTTTTGGATCTGTATCCCACTGGAACATCAGCTAGAAACTGCACGTGTTC CTACTGCAGCGTTGAGCAGCCTCCGCGAGCAAAGCATTGTCATGACTGCGACAAATGTGTTCTCCAGTTTGATCATCACTGTGTTTGGCTTGGAACATGC ATTGGTCAGGGAAATCATTGTAGATTTTGGTGGTACATCTGTTTGGAAACAGCATTGGGGTTGTGGACTGTGATCTGTTATATCACGTACTTGAAGGCAG ACGTTTCAAGGGTTTGGTGGAAGTATGCGATAGTGTTACTGCTGGTGATTACTCTATCGCTCTTCTTGCTATTTCTACATCTCCTTCTGCTTTTTCATAG TTATCTTATTCTGACAAACCAGACCACCTTTGAACTTGTAAGGCGCAGACGAATACCATATTTGAGGGGTATTCCTGAAAGAGTTTATCCCTTCAGTAAG GGAGTTTGTGGGAACTTGTATGATTTCTGTTGGGGTCCTAGAAGCATATACAGCTTGGAACGGATACCTTCGACAGCGGAGCTTGAAGAGAAGTCGAGGC CTTATACCTGCTTGGATATTTTGAGCTGCCGCTGTTGCTAA
AA sequence Show only first row Show all	>Lus10028384 pacid=23165995 polypeptide=Lus10028384 locus=Lus10028384.g ID=Lus10028384.BGIv1.0 annot-version=v1.0 MGLLDPCRNAFNRTLDRFLDAFPCLADPGRRSSLGLRLALVLLHLLYAGVLFLFDTDLIEKAKQQPWYTALYALLFVTTLVQYFITSSTSPGYVIDAMRD LNEKNAVARQAAMTSKQPASSKNGSFVITIDAAQQGRLLHGSHVMPWTKLVLDLYPTGTSARNCTCSYCSVEQPPRAKHCHDCDKCVLQFDHHCVWLGTC IGQGNHCRFWWYICLETALGLWTVICYITYLKADVSRVWWKYAIVLLLVITLSLFLLFLHLLLLFHSYLILTNQTTFELVRRRRIPYLRGIPERVYPFSK GVCGNLYDFCWGPRSIYSLERIPSTAELEEKSRPYTCLDILSCRCC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51390			DHHC-type zinc finger family p...		Lus10028384 [exp]	0	1
AT1G18640		PSP	3-phosphoserine phosphatase (....		Lus10034686 [exp]	1.0	0.8893
AT1G67490		KNOPF, KNF, GCS...	KNOPF, glucosidase 1 (.1.2)		Lus10015796 [exp]	2.8	0.8506
AT1G13880			ELM2 domain-containing protein...		Lus10000680 [exp]	6.7	0.8437
AT5G12240			unknown protein		Lus10026824 [exp]	7.9	0.8565
AT1G10095			Protein prenylyltransferase su...		Lus10022027 [exp]	8.2	0.8708
AT4G02580			NADH-ubiquinone oxidoreductase...		Lus10002721 [exp]	9.9	0.8332
AT3G22550			Protein of unknown function (D...		Lus10042606 [exp]	11.0	0.8354
AT4G04880			adenosine/AMP deaminase family...		Lus10020056 [exp]	11.6	0.8299
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Lus10032550 [exp]	16.5	0.8147
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10035744 [exp]	16.9	0.7536

Compare expression of checked genes

Lus10028384 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.