Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65770 111 / 3e-27 AMR1 ascorbic acid mannose pathway regulator 1 (.1) AT3G25750 108 / 2e-26 F-box family protein with a domain of unknown function (DUF295) (.1) AT2G17690 106 / 3e-25 SDC SUPPRESSOR OF DRM1 DRM2 CMT3, F-box family protein with a domain of unknown function (DUF295) (.1) AT2G17030 102 / 8e-24 F-box family protein with a domain of unknown function (DUF295) (.1) AT5G60060 100 / 4e-23 Protein of unknown function (DUF295) (.1) AT2G26160 99 / 5e-23 F-box family protein with a domain of unknown function (DUF295) (.1) AT1G44080 97 / 5e-22 F-box family protein with a domain of unknown function (DUF295) (.1) AT4G35733 93 / 8e-21 F-box family protein with a domain of unknown function (DUF295) (.1) AT2G17036 87 / 1e-18 F-box family protein with a domain of unknown function (DUF295) (.1) AT1G65740 86 / 4e-18 UCL1 UPWARD CURLY LEAF1, Protein of unknown function (DUF295) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041838 [exp] 338 / 2e-113 AT1G65770 147 / 2e-40 ascorbic acid mannose pathway regulator 1 (.1) Lus10023984 [exp] 128 / 7e-33 AT2G17030 336 / 2e-112 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10025100 [exp] 126 / 3e-32 AT2G17030 335 / 4e-112 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10021517 [exp] 72 / 2e-13 AT2G17030 166 / 2e-47 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10022618 [exp] 63 / 6e-11 AT2G17030 117 / 3e-30 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10035492 [exp] 46 / 4e-05 AT4G17565 63 / 1e-10 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10019204 [exp] 44 / 0.0002 AT1G57790 79 / 2e-16 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G105400 [exp] 279 / 8e-91 AT1G65770 148 / 8e-41 ascorbic acid mannose pathway regulator 1 (.1) Potri.005G105200 [exp] 274 / 7e-89 AT1G65770 132 / 4e-35 ascorbic acid mannose pathway regulator 1 (.1) Potri.005G105100 [exp] 237 / 2e-74 AT1G65770 135 / 3e-36 ascorbic acid mannose pathway regulator 1 (.1) Potri.005G105000 [exp] 187 / 2e-56 AT1G65770 124 / 8e-33 ascorbic acid mannose pathway regulator 1 (.1) Potri.009G140000 [exp] 140 / 2e-37 AT2G17030 370 / 6e-126 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.004G179685 [exp] 140 / 7e-37 AT2G17030 360 / 2e-121 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.001G277400 [exp] 97 / 5e-22 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.002G014500 [exp] 91 / 1e-19 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.002G015700 [exp] 51 / 7e-07 AT5G60060 63 / 5e-11 Protein of unknown function (DUF295) (.1) Potri.003G127700 [exp] 43 / 0.0003 AT5G55150 56 / 2e-08 Protein of unknown function (DUF295) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03478 [flax] [poplar] DUF295 Protein of unknown function (DUF295)
Representative CDS sequence Show only first row Show all	>Lus10028385 pacid=23166103 polypeptide=Lus10028385 locus=Lus10028385.g ID=Lus10028385.BGIv1.0 annot-version=v1.0 ATGACCGACACCGCCACCGACTTATCACGATGGGCCGATCTCCCGGAGGAGCTTCTGTCAGCAATCTCCCACCGCTTTGATTTCAGCATCGACGTCCTCC GATTCCGCTCCGTCTGCACTCCCTGGCGCTCTTCCCTCCCTTCCCCTTACTCCGAACACCAAAAGCAAACTTCTCCTCCTCCTCCTCCTCCTGTCTCCGT CAGGTTCCCTTTCTCCGCCAACGCCAACGACGGCGTCCTAGCTCCCTTTGGCGTATACCGTATGCAGTTCCAACCTCCAATCGACGGCAGCGGTAACGGC TGGTTGGTCAAGATCCAAGAATCTGAGCGCGGGAAACTCGAGCTGGTCAATCCAATCACTAACCTGAAGCTCCGTTACTCCACGCTTCAATTGAGCTCCC TCGAATTCAATCTCGTGAAATTAAGCAGCTCGGCTCGGGTGAGGTATAGATGCGGCTATACGTCGTTCGAGGTAAACAAAGCGGCTTTGTTCCCTTCATC CCAATTTACAGTAATAGCAATTTACCACCAAGGCAAGTTAGGGTTCTGGAGAAAGGGGGATCACACTTGGACTCTCCTGGACAACACCAATTTCAATTAC GATGATCTCATCCATTACAGAGATCGATTCTACGTAGTTGACAGATCCGGAGTGGTGTCCTGGATTAACTCATCTTCCATGGAAATCATCCGATTGGAAA TTCCGCCGCCGGTTGTCGGTGACGGCAGCGGGGGATGGCATCAGAAGAATCTGGTGGAGTCAGAGGGAGAACTGTACATGGTGGACAGGTATCTGGATGG AGCAAGAAGGAACTGGAAGGATGTGGAGGATGCGATTGACAGGTTTCCTGAGCAGGTTCGGTACCTGGTGGGATCGAGAAGAAGGGGGAGGATTTGGAAT CCGAGCGCGGTGGATTTCAAGGTGTACAAGATGGATGAGGAGAAAGGGAGGTGGCTTGATGTTGAATCGTTGGATGGCAGAGTGTTCGTTCTGACGAATG AATATTCATTCTCGTTCTCGAGTGTGGCGGAGAAATCAGAAGGGAACTGCATATACTACTCGGACGACGACGACTACGTGACTAGAGCGATGATGAGACC TGAAAGCGTTCGAGTGTTTCGGTTTCAGGATCGTAGTATCAACCAGCTGTCTGGATTATTGTCGCCGGCTGCTGCAGATTTCGACTTTTTCGGGTCGCCG GCTGCCTTGTGTTTGCTTCCTTGA
AA sequence Show only first row Show all	>Lus10028385 pacid=23166103 polypeptide=Lus10028385 locus=Lus10028385.g ID=Lus10028385.BGIv1.0 annot-version=v1.0 MTDTATDLSRWADLPEELLSAISHRFDFSIDVLRFRSVCTPWRSSLPSPYSEHQKQTSPPPPPPVSVRFPFSANANDGVLAPFGVYRMQFQPPIDGSGNG WLVKIQESERGKLELVNPITNLKLRYSTLQLSSLEFNLVKLSSSARVRYRCGYTSFEVNKAALFPSSQFTVIAIYHQGKLGFWRKGDHTWTLLDNTNFNY DDLIHYRDRFYVVDRSGVVSWINSSSMEIIRLEIPPPVVGDGSGGWHQKNLVESEGELYMVDRYLDGARRNWKDVEDAIDRFPEQVRYLVGSRRRGRIWN PSAVDFKVYKMDEEKGRWLDVESLDGRVFVLTNEYSFSFSSVAEKSEGNCIYYSDDDDYVTRAMMRPESVRVFRFQDRSINQLSGLLSPAAADFDFFGSP AALCLLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65770		AMR1	ascorbic acid mannose pathway ...		Lus10028385 [exp]	0	1
AT3G05640			Protein phosphatase 2C family ...		Lus10016831 [exp]	1.0	0.8280
AT4G08300			nodulin MtN21 /EamA-like trans...		Lus10022187 [exp]	2.0	0.8199
AT4G24050			NAD(P)-binding Rossmann-fold s...		Lus10003204 [exp]	9.0	0.7066
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10022083 [exp]	14.7	0.7203
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Lus10023096 [exp]	15.4	0.7532
AT3G54500			unknown protein		Lus10039553 [exp]	16.0	0.6931
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10002347 [exp]	16.1	0.6914
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10036392 [exp]	20.1	0.7151
AT5G22290	NAC	FSQ6, FAN, ANAC...	fructose-sensing quantitative ...		Lus10034183 [exp]	27.7	0.7015
AT4G08790			Nitrilase/cyanide hydratase an...		Lus10030303 [exp]	27.7	0.6595

Compare expression of checked genes

Lus10028385 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.