Plant FIBer expression Database

Lus10028386 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G17695 294 / 2e-102 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041839
[exp]
392 / 9e-141 AT2G17695 297 / 4e-103 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G105500
[exp]
308 / 7e-108 AT2G17695 296 / 4e-103 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09348 DUF1990 Domain of unknown function (DUF1990)
Representative CDS sequence
>Lus10028386 pacid=23166182 polypeptide=Lus10028386 locus=Lus10028386.g ID=Lus10028386.BGIv1.0 annot-version=v1.0
ATGGTGTTCTTGAGCTGGTCGCGACCGTCACCGAAGGAACAGCAGGATTGCCTACCGAAGTGCGGTAGCTTCAATTATGATCCCAAGTACAGAGGAGCCT
CTGCCAAGCCGCTGAAATCCCTCAAAGAAGACGAAGACCTCGTGAAAGATGGTTTCTTGCTGAACCATGCAAGGGTTCTAGTTGGCTCTGGTGCGGAGAC
TTACGAGAAGAGCAAGTCGGCACTTCAGTCAAGGAAACATTTTGGGTTGAATTGGGCATTCGTCGATCCCAAAACCCCAATTCAAAGTGGGGCGAAGTTC
TGTGTTTGCTTGAAGGAGTTTGTGCCGTGGGTGATGATGCCACTTGAGGTGGTGTATGTGAACGATGCGAGGAATCGTAAGAAGGCCACTGCTTCGTTTG
ATTTCGGCAGCGGCACGCTCCGTGGTCACTTGCTGGCTGGGGAAGAGCGCTTCTCGGTTGAAATGGACGAGAACAAGCAAGTGTGGTACGAGATACTGTC
ATTGTCCAAGCCAGCCAACTTCCTGTCTTTCGTAGGGTACCCATATGTGCAACTACGGCAGAAGGTCTTCGCTCATCAGTCTACCAACGCACTTCTTAAA
TATGTTAGTAATGGCTCTGATTGA
AA sequence
>Lus10028386 pacid=23166182 polypeptide=Lus10028386 locus=Lus10028386.g ID=Lus10028386.BGIv1.0 annot-version=v1.0
MVFLSWSRPSPKEQQDCLPKCGSFNYDPKYRGASAKPLKSLKEDEDLVKDGFLLNHARVLVGSGAETYEKSKSALQSRKHFGLNWAFVDPKTPIQSGAKF
CVCLKEFVPWVMMPLEVVYVNDARNRKKATASFDFGSGTLRGHLLAGEERFSVEMDENKQVWYEILSLSKPANFLSFVGYPYVQLRQKVFAHQSTNALLK
YVSNGSD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G17695 unknown protein Lus10028386
[exp]
0 1
AT3G09860 unknown protein Lus10023014
[exp]
1.0 0.9218
AT4G21190 EMB1417 embryo defective 1417, Pentatr... Lus10027535
[exp]
1.4 0.9082
AT5G24314 PDE225, PTAC7 PIGMENT DEFECTIVE 225, plastid... Lus10041454
[exp]
3.0 0.9005
AT5G18750 DNAJ heat shock N-terminal dom... Lus10032539
[exp]
4.5 0.8875
AT3G15180 ARM repeat superfamily protein... Lus10038999
[exp]
5.8 0.8574
AT5G03300 ADK2 adenosine kinase 2 (.1) Lus10009220
[exp]
7.4 0.8807
AT3G07525 ATG10, ATATG10 autophagy 10, autophagocytosis... Lus10002145
[exp]
8.5 0.8558
AT1G74410 RING/U-box superfamily protein... Lus10021628
[exp]
9.9 0.8743
AT5G24060 Pentatricopeptide repeat (PPR)... Lus10027532
[exp]
11.2 0.8846
AT2G38140 PSRP4 plastid-specific ribosomal pro... Lus10004829
[exp]
13.3 0.8900

Lus10028386 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.