Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35740 739 / 0 ATRECQ3, RECQL3 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) AT1G31360 254 / 2e-74 MED34, ATRECQ2, RECQL2 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) AT3G05740 239 / 1e-69 RECQI1 RECQ helicase l1 (.1) AT1G10930 229 / 2e-63 ATSGS1, RECQL4A ,ATRECQ4A DNA helicase (RECQl4A) (.1) AT1G60930 217 / 2e-59 RECQL4B ,ATRECQ4B RECQ helicase L4B (.1) AT5G27680 150 / 1e-37 RECQSIM RECQ helicase SIM (.1) AT1G27880 149 / 3e-37 DEAD/DEAH box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041840 [exp] 1196 / 0 AT4G35740 879 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Lus10026219 [exp] 258 / 2e-76 AT3G05740 816 / 0.0 RECQ helicase l1 (.1) Lus10042451 [exp] 253 / 6e-75 AT3G05740 814 / 0.0 RECQ helicase l1 (.1) Lus10033289 [exp] 227 / 3e-64 AT1G31360 949 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10015467 [exp] 231 / 5e-64 AT1G10930 1288 / 0.0 DNA helicase (RECQl4A) (.1) Lus10034749 [exp] 202 / 2e-55 AT1G31360 853 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10034434 [exp] 189 / 2e-50 AT1G31360 280 / 2e-82 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10004503 [exp] 133 / 5e-32 AT5G27680 912 / 0.0 RECQ helicase SIM (.1) Lus10036983 [exp] 119 / 1e-27 AT1G27880 344 / 7e-106 DEAD/DEAH box RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G107400 [exp] 791 / 0 AT4G35740 850 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Potri.005G019800 [exp] 244 / 1e-71 AT3G05740 828 / 0.0 RECQ helicase l1 (.1) Potri.003G104300 [exp] 244 / 7e-71 AT1G31360 986 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.003G015800 [exp] 234 / 3e-65 AT1G10930 1329 / 0.0 DNA helicase (RECQl4A) (.1) Potri.013G161200 [exp] 200 / 3e-54 AT1G31360 310 / 2e-93 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.010G056500 [exp] 158 / 4e-40 AT1G27880 935 / 0.0 DEAD/DEAH box RNA helicase family protein (.1) Potri.005G026400 [exp] 139 / 4e-34 AT5G27680 875 / 0.0 RECQ helicase SIM (.1) Potri.003G038300 [exp] 42 / 0.001 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10028387 pacid=23166063 polypeptide=Lus10028387 locus=Lus10028387.g ID=Lus10028387.BGIv1.0 annot-version=v1.0 ATGAAGAAGGCGTTGTTTCCGGTGAAGAAAGTATGCGGCGGCGAGAAGCAGATAACCGCGAAGGAAGGTCTCGTGAAGCTTCTGAGATGGCATTTTGGCC ACTCCGATTTCAGAGGCAAACAGTTGGAGGCGATTGAAGCTATTTTATCTGGAAGAGATTGTTTTTGCCTCATGCCTACGGGAGGAGGTAAGTCAATGTG TTATCAAATTCCTGCATTGGCGAAGCCTGGAATTGTGCTTGTGGTTTCTCCTTTAATAGGTATCTTCTTGATCTTCACTAACTGCGTTTTGTTGCTGTTT TGCTGTTTGCTATTTCCAGCTCTGATGGAAAACCAAGTGACTGCACTGAAGGAAAAAGGGATTGCTGCAGAATTTCTATCTTCAACTCAAACAACCCATG TCAAAAGTAAGATTCATGAAGACCTTGATTCTGGAAAACCATCCACAAGGCTGCTATATGTAACCCCAGAGTTGATTGAAACATCCGGATTTATGTCGAA GCTCTCAAAGATCCATGCTAGAGGGTTGTTGAATATCATTGCCATTGATGAGGCACATTGCATCTCATCATGGGGCCATGATTTCAGGCCTAGTTATCGC AAATTGTCTTCCTTGCGTACTCGCCTTCCAGATGTACCGATACTGGCTCTCACAGCTACTGCTGTTCCAAAAGTTCAGAAGGACGTAATAGATTCATTAT GCTTGCAGAGCCCTTTAGTTCTCAAATCTTCTTTTAACCGCCCCACTATACATTATGAAGTGAGATACAAAGATCTTTTAGAAAATGTCTACAGCGATAT ATCTTCTCTGCTCAAATCCAGCGGTGATGTTTGTGCTATCGTGTACTGCCTTGAAAGAGCAGTCTGCGATGATTTGGCTGTTCGTCTTTCCAAACATGGC ATTTCTTGTGCCGCTTACCATGCTGGCCTGAATAACAAGCTGCGCAGCTCTGTATTGGATGATTGGATATCTTCAAGAACACAAGTTGTTGTAGCCACGG TGGCTTTTGGCATATTGCAGGAGTATATTATAAGTAATGCTGAGAGCAAGAAATGGCAGCCCTTAGGTTCACAGGAAGAGTCATCAAAGAAATCCCTAGC TGATTTTAAGCTGATGGTTGAATACTGTGAAGGTTCTGGATGCCGTAGGAAAAAGATTCTTGAAAACTTTGGGGAACAGGTTCCTTCATCACTATGTCAA AAAACATGCGACGCATGCAAGCATCCTCACCAAGTTACTCAGTGCTTAGAGAAGCTGGGAACTGTTGGTCGACAAAGAAGTGGCCCTTCTCGAATATTCA TGAGCAGCTCCAATGACATGGTAAGCGGGAAGCAAATGTCCGAGTTCTGGAATCGTGGCGATGAAGCCAGTAGTTCCGACGAAGAAATCTCCGATTGCGA AGGTGATACTTCCCTTTTCCATCCTCGTATTCATGATGCTCACTTGAAGTTTACCAGAAGAGCGGGACTGAACGAGAAGATGGAGCTCCTGGAGCAAGCG GAAGAAAAATACTACGGGAACCAAAACCAACAATCGAATAAGCCCAACAAGAACGCCATTACTGAAGCACTCAGAGATGCAAGTAGAAAAAGACTATTAG ATTCCCTAACGCAGGCCAACCAGCGTCTTGGCAACCTGAGCATTGAGATGGAAACATCTGCCAGCTTCCTTGAACAGGAGTGTTTCAACAAGTACGGGAA GGTCGGGAGGTCTTTCTATTATTCTCAGGTCGCAAGCACCGTAAGGTGGCTATCTACTTCAACAGCTTCGGACTTGACAAATCGACTCGGTTCTACACCT TCGAACGAACCAGTCAGGACTTCTCCAATACCCGCCAGCTTGCCATTACTTTCACAAGTTCAGCCATCGCCAGAAACAGAGGTTCAAGGCATTGAATCAT GGAGTTCACCAGCTGCAAGCACTCCACCTACACTGCATCCTCCTCCTGCCTCCACAAAGCTCCCACAAATCCCTTCTTTCTCAGAGTTTGTCAACCGAAA GAAGTCAACAATTCCCATCAACCATTCAAGTTCATCACACGATTCATCTTCTCCGAATGCCAAGAGACAGAGGAAGACATGA
AA sequence Show only first row Show all	>Lus10028387 pacid=23166063 polypeptide=Lus10028387 locus=Lus10028387.g ID=Lus10028387.BGIv1.0 annot-version=v1.0 MKKALFPVKKVCGGEKQITAKEGLVKLLRWHFGHSDFRGKQLEAIEAILSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIGIFLIFTNCVLLLF CCLLFPALMENQVTALKEKGIAAEFLSSTQTTHVKSKIHEDLDSGKPSTRLLYVTPELIETSGFMSKLSKIHARGLLNIIAIDEAHCISSWGHDFRPSYR KLSSLRTRLPDVPILALTATAVPKVQKDVIDSLCLQSPLVLKSSFNRPTIHYEVRYKDLLENVYSDISSLLKSSGDVCAIVYCLERAVCDDLAVRLSKHG ISCAAYHAGLNNKLRSSVLDDWISSRTQVVVATVAFGILQEYIISNAESKKWQPLGSQEESSKKSLADFKLMVEYCEGSGCRRKKILENFGEQVPSSLCQ KTCDACKHPHQVTQCLEKLGTVGRQRSGPSRIFMSSSNDMVSGKQMSEFWNRGDEASSSDEEISDCEGDTSLFHPRIHDAHLKFTRRAGLNEKMELLEQA EEKYYGNQNQQSNKPNKNAITEALRDASRKRLLDSLTQANQRLGNLSIEMETSASFLEQECFNKYGKVGRSFYYSQVASTVRWLSTSTASDLTNRLGSTP SNEPVRTSPIPASLPLLSQVQPSPETEVQGIESWSSPAASTPPTLHPPPASTKLPQIPSFSEFVNRKKSTIPINHSSSSHDSSSPNAKRQRKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Lus10028387 [exp]	0	1
AT1G69450			Early-responsive to dehydratio...		Lus10036791 [exp]	1.0	0.8899
AT5G10630			Translation elongation factor ...		Lus10026953 [exp]	1.7	0.8043
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10035444 [exp]	3.2	0.8216
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10007300 [exp]	9.5	0.7735
AT2G16940			Splicing factor, CC1-like (.1....		Lus10027830 [exp]	10.5	0.7819
					Lus10038468 [exp]	11.0	0.7351
AT1G28100			unknown protein		Lus10002573 [exp]	11.0	0.7996
AT3G19650			cyclin-related (.1)		Lus10002122 [exp]	11.2	0.7911
AT3G08880			unknown protein		Lus10022668 [exp]	11.6	0.7709
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Lus10043172 [exp]	13.6	0.7902

Compare expression of checked genes

Lus10028387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.