Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35750 295 / 6e-103 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT3G10210 175 / 5e-55 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G69340 59 / 3e-10 appr-1-p processing enzyme family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041841 [exp] 380 / 3e-136 AT4G35750 323 / 7e-114 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10021230 [exp] 258 / 6e-88 AT4G35750 265 / 7e-91 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10005640 [exp] 255 / 4e-87 AT4G35750 260 / 6e-89 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10035431 [exp] 198 / 8e-64 AT3G10210 353 / 2e-124 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10031044 [exp] 198 / 8e-64 AT3G10210 353 / 3e-124 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10030413 [exp] 65 / 4e-12 AT1G69340 917 / 0.0 appr-1-p processing enzyme family protein (.1) Lus10037119 [exp] 59 / 3e-10 AT1G69340 966 / 0.0 appr-1-p processing enzyme family protein (.1) Lus10036809 [exp] 56 / 5e-09 AT1G69340 971 / 0.0 appr-1-p processing enzyme family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G014700 [exp] 281 / 4e-97 AT4G35750 296 / 3e-103 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.005G107300 [exp] 266 / 3e-91 AT4G35750 284 / 1e-98 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.005G246800 [exp] 259 / 2e-88 AT4G35750 282 / 9e-98 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.006G043166 [exp] 196 / 4e-63 AT3G10210 359 / 6e-127 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.008G093100 [exp] 58 / 9e-10 AT1G69340 935 / 0.0 appr-1-p processing enzyme family protein (.1) Potri.010G161500 [exp] 57 / 1e-09 AT1G69340 926 / 0.0 appr-1-p processing enzyme family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028388 pacid=23166132 polypeptide=Lus10028388 locus=Lus10028388.g ID=Lus10028388.BGIv1.0 annot-version=v1.0 ATGTGCAGCGGTCAGATTTCGGAGTCTGAACAGCTGCAGCTTCTCGAGAAGCTGGGGGTTTTCAGGATCCACGGCAGAGATAAGCGCGGTCTCAAGGTTT TGCGGATCATCGGCAGATATTTTCCTTCACGGTTGGTGACAGCTGAGGCGCTTAAGAAGTATCTGGAGGCCAAGATCTTCCCCAAGCTGTGCAAGAAGCA GTTCACGGTCTTGTACCTCCACACCGGAGTTCAAAGATCGGATAACTTCCCTGGCATATCCGTGCTCCGATCCGTCTACGATGCTATCCCGGCCAACGCG AAGGACAATCTTCAGGCCGTTTACTTCGTCCACCCAGGCCTTCAGGCCAGGCTCTTCCTTGCCACCTTTGGCCGTTTCCTCTTCACCGGAGGATTATACG GGAAGCTGAATTACATTAGCAGGCTTGATTATCTTTGGGAGCACATCAGGAGGAACGAGGTCGAGATTCCGGAGTTCGTGGCCGATCACGACGAGGATTT GGAAGATCGCCCGATGATGGATTACGGAATCGAGAGTGATCATCCCAGAGCTAGCGGCGGCAGGATGGCCATTATGGATTCCCCTGTTTCCACCTACTCC ATGAGATGTATCTCGTAG
AA sequence Show only first row Show all	>Lus10028388 pacid=23166132 polypeptide=Lus10028388 locus=Lus10028388.g ID=Lus10028388.BGIv1.0 annot-version=v1.0 MCSGQISESEQLQLLEKLGVFRIHGRDKRGLKVLRIIGRYFPSRLVTAEALKKYLEAKIFPKLCKKQFTVLYLHTGVQRSDNFPGISVLRSVYDAIPANA KDNLQAVYFVHPGLQARLFLATFGRFLFTGGLYGKLNYISRLDYLWEHIRRNEVEIPEFVADHDEDLEDRPMMDYGIESDHPRASGGRMAIMDSPVSTYS MRCIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35750			SEC14 cytosolic factor family ...		Lus10028388 [exp]	0	1
AT4G17790			SNARE associated Golgi protein...		Lus10004564 [exp]	2.0	0.8865
AT1G73210			Protein of unknown function (D...		Lus10038327 [exp]	2.2	0.8356
AT4G35750			SEC14 cytosolic factor family ...		Lus10041841 [exp]	3.7	0.8674
AT5G14280	GeBP		DNA-binding storekeeper protei...		Lus10036981 [exp]	5.7	0.8516
AT3G15890			Protein kinase superfamily pro...		Lus10011490 [exp]	7.1	0.8627
AT3G52360			unknown protein		Lus10016198 [exp]	7.3	0.7927
AT3G48660			Protein of unknown function (D...		Lus10015769 [exp]	12.8	0.8001
AT5G02090			unknown protein		Lus10024357 [exp]	14.3	0.8291
					Lus10039584 [exp]	15.5	0.6688
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Lus10027130 [exp]	15.7	0.7656

Compare expression of checked genes

Lus10028388 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.