Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35760 320 / 4e-107 NAD(P)H dehydrogenase (quinone)s (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041842 [exp] 605 / 0 AT4G35760 320 / 8e-107 NAD(P)H dehydrogenase (quinone)s (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G106500 [exp] 355 / 9e-121 AT4G35760 385 / 3e-133 NAD(P)H dehydrogenase (quinone)s (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07884 [flax] [poplar] VKOR Vitamin K epoxide reductase family
Representative CDS sequence Show only first row Show all	>Lus10028389 pacid=23166027 polypeptide=Lus10028389 locus=Lus10028389.g ID=Lus10028389.BGIv1.0 annot-version=v1.0 ATGGCGAGGAGGTTAATGAGCATCTCGTCGTCGTCGTCTTCTTCATCTGCTCCACCTATTCCACGAGCTTCTTCTTTTTCAACCACTCCTTCTTCCCTCC GTCCTCATTTACCGTTCTCCTCCTCTACTGCAGCTGCTGGTGCACTTCACTTCAAGGTGGAATCGAGATGGAGAGTGAAGTGCATGAGTTCACCAGACAC TAAATCTGAAGCAACTTCAACGACTACTACTACTACTACTCCTCCGTCTCCTTCCTCCAGCACATCCTTGTTCTATTGGTCTGCGGCTCTTGGCAGCATA GGCTTCGCTGAAACTGCCTACCTGACTTACCTTAAGCTCACTAATTCCACCGCGTTTTGTCCACTTGATGCCGGCGCTGCGGGTGGCTGCACCGACATTC TCTTCAGTGATTACTCCGTCGTTTTCGGGGTTCCTCTTCCTTTGATTGGGATGGCTGCTTACGGTTTGGTAGCTGCACTCGGTCTGCAGCTATCTACAAA TAATTTGCCGTTTGGGGTTGGAGACTCCAATGGTTGGAAGGCAATTTTACTTGGAACAACTACCTCCATGGCAGCAACTAGTGGATATCTTCTCTACATC TTAACAACTCAATTCCCTGGAGAATCCTGTCCTTATTGCCTCTTCTCCGCTTTCTTGTCATTTAGCTTATTTTTAATAACCATAAAGGATATTGGGTGGC AGGAGACACAGAAGGCACTAGGTTTACAGTTGTTTATTGCGAGTGTGGTAATTGCCAGCTTGAGATTCTCATACGGAGCTCCTCTACCTTTCATGCCCAA GGAACCTGAGATCAACCTAGAATATGTTCCAACGGAGATAACAACCCCATCAACTCCTTTTACCGTCTCTCTTGCAAAGCATCTACGCTCTATTGGTGCC AAAATGTACGGGGCATTCTGGTGTTCGCACTGCATCGAGCAAAAGCAGATGTTTGGAGAAGAGGCGTCCAAGCAGTTGAACTACGTGGAATGTTTCCCAG ATGGATTGAACAAAAACACGAAAATGGCCCTCGAATGTGTAGCCTCCGACATTAAAGGGTTCCCAACATGGGTGATTAATGGCGAGGTAATAGGTGGGGA GCTTACCCTATCTGAGCTTGCGGAGAAATCTGGATTCCAGCAGCTAAACGATAACCAGTTGTCTAGCCAACCTTGA
AA sequence Show only first row Show all	>Lus10028389 pacid=23166027 polypeptide=Lus10028389 locus=Lus10028389.g ID=Lus10028389.BGIv1.0 annot-version=v1.0 MARRLMSISSSSSSSSAPPIPRASSFSTTPSSLRPHLPFSSSTAAAGALHFKVESRWRVKCMSSPDTKSEATSTTTTTTTPPSPSSSTSLFYWSAALGSI GFAETAYLTYLKLTNSTAFCPLDAGAAGGCTDILFSDYSVVFGVPLPLIGMAAYGLVAALGLQLSTNNLPFGVGDSNGWKAILLGTTTSMAATSGYLLYI LTTQFPGESCPYCLFSAFLSFSLFLITIKDIGWQETQKALGLQLFIASVVIASLRFSYGAPLPFMPKEPEINLEYVPTEITTPSTPFTVSLAKHLRSIGA KMYGAFWCSHCIEQKQMFGEEASKQLNYVECFPDGLNKNTKMALECVASDIKGFPTWVINGEVIGGELTLSELAEKSGFQQLNDNQLSSQP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35760			NAD(P)H dehydrogenase (quinone...		Lus10028389 [exp]	0	1
AT2G48120		PAC	pale cress protein (PAC) (.1),...		Lus10000662 [exp]	1.7	0.8664
AT3G10840			alpha/beta-Hydrolases superfam...		Lus10003690 [exp]	2.2	0.8835
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10002760 [exp]	4.7	0.8090
AT2G38780			unknown protein		Lus10019776 [exp]	4.9	0.8785
AT3G04650			FAD/NAD(P)-binding oxidoreduct...		Lus10022002 [exp]	7.3	0.8354
AT5G08010			unknown protein		Lus10040520 [exp]	8.5	0.8520
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10024729 [exp]	9.2	0.8480
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Lus10027693 [exp]	11.3	0.8312
					Lus10019158 [exp]	11.8	0.8300
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10010517 [exp]	12.0	0.8306

Compare expression of checked genes

Lus10028389 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.