Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35780 445 / 2e-153 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT2G17700 399 / 2e-135 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT4G38470 391 / 3e-132 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT1G62400 217 / 2e-67 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT4G31170 207 / 5e-63 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 194 / 7e-58 Protein kinase superfamily protein (.1) AT1G18160 195 / 5e-55 Protein kinase superfamily protein (.1) AT5G58950 189 / 8e-55 Protein kinase superfamily protein (.1) AT1G73660 194 / 2e-54 protein tyrosine kinase family protein (.1) AT5G03730 191 / 8e-54 AtCTR1, SIS1, CTR1 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041845 [exp] 614 / 0 AT4G35780 791 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10023989 [exp] 433 / 2e-148 AT4G38470 771 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10022653 [exp] 426 / 8e-147 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10012517 [exp] 424 / 9e-145 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10025092 [exp] 422 / 5e-136 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10028590 [exp] 278 / 4e-88 AT4G35780 506 / 9e-175 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10018895 [exp] 272 / 3e-86 AT4G35780 508 / 1e-175 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10004153 [exp] 279 / 8e-84 AT2G17700 611 / 0.0 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) Lus10005630 [exp] 221 / 3e-67 AT4G38470 514 / 8e-179 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G060600 [exp] 482 / 1e-167 AT4G35780 793 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.005G106200 [exp] 454 / 2e-156 AT4G35780 821 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179457 [exp] 428 / 6e-149 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179100 [exp] 423 / 2e-146 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.009G139400 [exp] 426 / 9e-146 AT4G38470 807 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179514 [exp] 424 / 3e-145 AT4G38470 786 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G246500 [exp] 364 / 6e-122 AT4G38470 645 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.002G015400 [exp] 348 / 1e-115 AT4G38470 650 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G190200 [exp] 276 / 6e-88 AT4G38470 500 / 2e-172 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.002G070000 [exp] 272 / 4e-86 AT4G38470 498 / 1e-171 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10028392 pacid=23166050 polypeptide=Lus10028392 locus=Lus10028392.g ID=Lus10028392.BGIv1.0 annot-version=v1.0 ATGGCAATCGAGGAGGATTTGGAGAGCTGCGGCAGCAGAGCGGCCGACTCCTTCTCCCTCGCTAATCCTCGGCACCACAGGCAGAAGCTGGAGGTCTATA ACGAGGTCCTCAGGAGAATTCAGGATTCCGGCCATGAAGACGCCCATCTTCCTGGCTTTGACGATCAGCTCTGGCTTCATTTCAATCGCTTACCTGCTCG ATATGCTCTAGACGTTAATGTTGAGAGGGCAGAGGACGTACTTACTCACAAGAGGCTGTTGCAATTGGCAGAAGATCCTGCTAATCGACTTGCATTTGAA GTTCGTTTGGTGCAGGAACAGCAGTACCCGAAACAGCCTTGTATTTCTGCCATCAACGTTGTCAATAACACAAGGGTTGTGCCTCTTCCTGGTTGCATAG AGATACCATGCGATGGAACTGATGTCTGGGAAATTGATAACAGTCAGCTAAGAATTGAAAACAAAGTAGCATCTGGAGCATACGGTGATCTATACAAAGG CACGTATTGTAGTCAGGAAGTAGCTGTTAAAGTCCTAAAGCCAGAGCGCGTCAGTGCGGAAATGCTTAGAGAGTTTTCGCAGGAAGTTTATATAATGAGA AAAGTTCGGCATAAGAATGTTGTGCAATTCATAGGAGCATGCACTCAACCTCCAAATTTGTGTATTGTGACGGAATTCATGGCTAGAGGAAGTATATATG ATTTTCTGCATAAGCACGATGGTGTCTTTAAACTCCCGTCCTTAATCAGAGTTGCAATAGATGTGTCGAAGGGAATGAATTATCTCCACCAGAATAGTAT AATTCACAGAGATTTGAAGACAGCTAATCTTCTGATGGATGAAAATGAAGTGATTGAACACAAACCATATGATCACAAGGCAGACGTTTTCAGTTTTGGG ATAGTGATGTGGGAGCTTTTGACCGGAGAGCTTCCTTACTCATACCTAACCCCATTGCAAGCAGCAGTTGGCGTGGTGCAAAAGGGTTTGCGTCCTACAA TTCCGAAAGAGACTCAACCTAAACTTGCGGAACTACTTGATAGATGCTGGAGACAGGACCCGACAGAAAGGCCCGACTTCTGTGAAATCATAGATATTCT TCAGCAAATCGCCAAAGAGGTTGGAGATGGGAAGGAAGGTCGTCGCAAGGATCGAACCGCTGGTGGGTTTTTCTCATCGTTCAAGAGAGGCCACCATTAG
AA sequence Show only first row Show all	>Lus10028392 pacid=23166050 polypeptide=Lus10028392 locus=Lus10028392.g ID=Lus10028392.BGIv1.0 annot-version=v1.0 MAIEEDLESCGSRAADSFSLANPRHHRQKLEVYNEVLRRIQDSGHEDAHLPGFDDQLWLHFNRLPARYALDVNVERAEDVLTHKRLLQLAEDPANRLAFE VRLVQEQQYPKQPCISAINVVNNTRVVPLPGCIEIPCDGTDVWEIDNSQLRIENKVASGAYGDLYKGTYCSQEVAVKVLKPERVSAEMLREFSQEVYIMR KVRHKNVVQFIGACTQPPNLCIVTEFMARGSIYDFLHKHDGVFKLPSLIRVAIDVSKGMNYLHQNSIIHRDLKTANLLMDENEVIEHKPYDHKADVFSFG IVMWELLTGELPYSYLTPLQAAVGVVQKGLRPTIPKETQPKLAELLDRCWRQDPTERPDFCEIIDILQQIAKEVGDGKEGRRKDRTAGGFFSSFKRGHH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10028392 [exp]	0	1
AT5G38710			Methylenetetrahydrofolate redu...		Lus10003051 [exp]	5.0	0.9458
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10041845 [exp]	6.0	0.9333
AT2G35720		OWL1	ORIENTATION UNDER VERY LOW FLU...		Lus10008515 [exp]	13.3	0.8924
AT1G36990			unknown protein		Lus10028037 [exp]	13.9	0.9020
AT5G66810			unknown protein		Lus10016766 [exp]	16.2	0.9053
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Lus10003665 [exp]	18.5	0.9332
AT3G30390			Transmembrane amino acid trans...		Lus10036845 [exp]	21.6	0.9285
AT5G11310			Pentatricopeptide repeat (PPR)...		Lus10013139 [exp]	24.6	0.8805
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10003567 [exp]	28.6	0.9107
AT3G56120			S-adenosyl-L-methionine-depend...		Lus10033083 [exp]	29.5	0.8924

Compare expression of checked genes

Lus10028392 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.