Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35783 59 / 1e-13 RTFL6, DVL17 DEVIL 17, ROTUNDIFOLIA like 6 (.1) AT2G29125 47 / 2e-08 RTFL2, DVL13 DEVIL 13, ROTUNDIFOLIA like 2 (.1) AT1G68825 45 / 2e-08 DVL5, RTFL15 DEVIL 5, ROTUNDIFOLIA like 15 (.1.2) AT3G46613 46 / 9e-08 RTFL4, DVL15 DEVIL 15, ROTUNDIFOLIA like 4 (.1) AT5G59510 45 / 2e-07 RTFL5, DVL18 DEVIL 18, ROTUNDIFOLIA like 5 (.1) AT3G55515 44 / 2e-07 DVL8, RTFL7 DEVIL 8, ROTUNDIFOLIA like 7 (.1) AT1G13245 42 / 3e-07 RTFL17, DVL4 DEVIL 4, ROTUNDIFOLIA like 17 (.1) AT4G13395 42 / 5e-07 DVL10, RTFL12 DEVIL 10, ROTUNDIFOLIA like 12 (.1) AT1G67265 42 / 6e-07 DVL3, RTFL21 DEVIL 3, ROTUNDIFOLIA like 21 (.1) AT2G39705 42 / 8e-07 RTFL8, DVL11 DEVIL 11, ROTUNDIFOLIA like 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041846 [exp] 96 / 3e-28 AT4G35783 59 / 1e-13 DEVIL 17, ROTUNDIFOLIA like 6 (.1) Lus10002705 [exp] 48 / 5e-09 AT2G39705 86 / 1e-23 DEVIL 11, ROTUNDIFOLIA like 8 (.1) Lus10040784 [exp] 46 / 4e-08 AT5G59510 84 / 1e-21 DEVIL 18, ROTUNDIFOLIA like 5 (.1) Lus10023399 [exp] 46 / 5e-08 AT2G39705 91 / 3e-25 DEVIL 11, ROTUNDIFOLIA like 8 (.1) Lus10034272 [exp] 45 / 6e-08 AT1G13245 72 / 5e-19 DEVIL 4, ROTUNDIFOLIA like 17 (.1) Lus10041491 [exp] 44 / 1e-07 AT1G13245 66 / 1e-16 DEVIL 4, ROTUNDIFOLIA like 17 (.1) Lus10001569 [exp] 45 / 2e-07 AT5G59510 79 / 8e-20 DEVIL 18, ROTUNDIFOLIA like 5 (.1) Lus10021966 [exp] 42 / 1e-06 AT1G53708 73 / 8e-19 ROTUNDIFOLIA like 9 (.1) Lus10026526 [exp] 42 / 1e-06 AT2G36985 63 / 2e-15 ROTUNDIFOLIA4, DEVIL 16, DVL family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G226250 [exp] 49 / 7e-10 AT2G36985 67 / 3e-17 ROTUNDIFOLIA4, DEVIL 16, DVL family protein (.1) Potri.008G035900 [exp] 49 / 8e-10 AT2G36985 66 / 1e-16 ROTUNDIFOLIA4, DEVIL 16, DVL family protein (.1) Potri.001G242800 [exp] 49 / 1e-09 AT2G29125 71 / 4e-17 DEVIL 13, ROTUNDIFOLIA like 2 (.1) Potri.009G034300 [exp] 47 / 2e-08 AT2G29125 64 / 9e-15 DEVIL 13, ROTUNDIFOLIA like 2 (.1) Potri.010G201700 [exp] 45 / 6e-08 AT2G39705 72 / 2e-18 DEVIL 11, ROTUNDIFOLIA like 8 (.1) Potri.008G057800 [exp] 45 / 6e-08 AT2G39705 84 / 8e-23 DEVIL 11, ROTUNDIFOLIA like 8 (.1) Potri.008G116700 [exp] 44 / 1e-07 AT1G13245 76 / 6e-21 DEVIL 4, ROTUNDIFOLIA like 17 (.1) Potri.010G129600 [exp] 43 / 1e-07 AT1G13245 75 / 1e-20 DEVIL 4, ROTUNDIFOLIA like 17 (.1) Potri.004G102950 [exp] 42 / 6e-07 AT1G67265 64 / 4e-16 DEVIL 3, ROTUNDIFOLIA like 21 (.1) Potri.003G073900 [exp] 42 / 1e-06 AT1G53708 81 / 9e-22 ROTUNDIFOLIA like 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08137 [flax] [poplar] DVL DVL family
Representative CDS sequence Show only first row Show all	>Lus10028393 pacid=23166149 polypeptide=Lus10028393 locus=Lus10028393.g ID=Lus10028393.BGIv1.0 annot-version=v1.0 ATGTTGGTGGGTAGATGTCTGACTCGCCAAGGGAGCCAAAGGGTCGTCGTCGGCGAAGTTGACGGTGGCTCCGGCGGCGTTCCTCATCAACAACAACCTG CAGGTTGCATGGGGACGGTGAGGGAGCAGCGTTCAAGGTTTTATGTTGCGAGGAGATGCGTCGTTATGCTTCTTTGTTGGCACAAATACGGCAAGTCTTA G
AA sequence Show only first row Show all	>Lus10028393 pacid=23166149 polypeptide=Lus10028393 locus=Lus10028393.g ID=Lus10028393.BGIv1.0 annot-version=v1.0 MLVGRCLTRQGSQRVVVGEVDGGSGGVPHQQQPAGCMGTVREQRSRFYVARRCVVMLLCWHKYGKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35783		RTFL6, DVL17	DEVIL 17, ROTUNDIFOLIA like 6 ...		Lus10028393 [exp]	0	1
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10032263 [exp]	10.2	0.9978
AT1G72460			Leucine-rich repeat protein ki...		Lus10037687 [exp]	14.0	0.9488
					Lus10016593 [exp]	14.6	0.9977
AT5G13620			unknown protein		Lus10017168 [exp]	17.8	0.9977
					Lus10014857 [exp]	20.6	0.9977
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10009470 [exp]	23.0	0.9977
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	25.2	0.9977
AT3G03200	NAC	ANAC045	NAC domain containing protein ...		Lus10033650 [exp]	26.2	0.9652
AT4G35220			Cyclase family protein (.1)		Lus10019823 [exp]	27.2	0.9977
AT3G23940			dehydratase family (.1.2)		Lus10043131 [exp]	29.1	0.9977

Compare expression of checked genes

Lus10028393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.