Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38290 480 / 1e-167 AMT2;1, ATAMT2 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) AT4G13510 99 / 5e-22 ATAMT1;1, AMT1;1 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) AT3G24300 97 / 1e-21 ATAMT1;3, AMT1;3 ammonium transporter 1;3 (.1) AT3G24290 92 / 5e-20 AMT1;5 ammonium transporter 1;5 (.1) AT1G64780 90 / 4e-19 ATAMT1;2 ammonium transporter 1;2 (.1) AT4G28700 74 / 4e-14 AMT1;4 ammonium transporter 1;4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041851 [exp] 727 / 0 AT2G38290 430 / 2e-149 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10024833 [exp] 529 / 0 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10018748 [exp] 528 / 0 AT2G38290 557 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10024186 [exp] 525 / 0 AT2G38290 540 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10009928 [exp] 524 / 0 AT2G38290 539 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10014713 [exp] 511 / 1e-179 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10003093 [exp] 511 / 1e-179 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10025692 [exp] 504 / 8e-177 AT2G38290 639 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10001776 [exp] 486 / 3e-169 AT2G38290 503 / 3e-175 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G106000 [exp] 652 / 0 AT2G38290 516 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.002G047000 [exp] 511 / 4e-180 AT2G38290 511 / 1e-179 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.005G216000 [exp] 511 / 4e-180 AT2G38290 528 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.013G040401 [exp] 503 / 5e-177 AT2G38290 471 / 1e-163 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.018G033500 [exp] 504 / 6e-177 AT2G38290 525 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.001G305400 [exp] 493 / 7e-173 AT2G38290 590 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.006G102800 [exp] 483 / 1e-168 AT2G38290 664 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.016G121400 [exp] 479 / 3e-167 AT2G38290 648 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.019G023012 [exp] 472 / 2e-164 AT2G38290 567 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.019G000800 [exp] 471 / 3e-164 AT2G38290 568 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00909 [flax] [poplar] Ammonium_transp Ammonium Transporter Family
Representative CDS sequence Show only first row Show all	>Lus10028397 pacid=23165986 polypeptide=Lus10028397 locus=Lus10028397.g ID=Lus10028397.BGIv1.0 annot-version=v1.0 ATGAATAACTCGGACTATATAAACATACCACCTCTGCCCTCTAGCTTAGTTACCGACGAGGGCTCCCCCAACTGGCTCAACAAAGGCGACAATGCGTGGC AGCTCATCGCGACCAATCTGGTCTGCATCCAGAGCGTTCCAGGGCTTGTCATTCTTTACGGAAGCGTGGTCAAGAAGAAATGGGCGGTCAACTCGGCCTT CATGGCCCTCTACGCCTTTGCTGCCGTGCTTCTCTGCTGGGTCTTGTGGGCTCATCACATGGCATTCGGAAGTTTGGGGAAGAGTCCCTTGATTGCAAAT CCGGCCTTTGTACCCACCGAAAGTTTCCTTCTCGAAAGGTCTAAGCTTGGATTTGTTCCGATGGCAGACTTTGTGTTTTACCAGTTCGCTTTTGCTGCAA TCACTGTCATACTTCTGGCCGGTTCCTTGCTCGGAAGGATGAATTTCTATGCTTGGATGCTGTTTGTGCCTCTGTGGCTCACCTTCAGCTATACCGTTGG AGCTTATGCCATCTGGGGAGGAGGGTTCCTTGAAGATTGCATTATTGATTATGCTGGTGGCTTTGTGATTCACCTCTCCTCTGGCGTAGCTGGTTTCACC ACTGCATATTGGGCAGTAGGACCACGGCATTCTCAGGATAGGCAGCATTTTCCGCCGAACAACATAATCCACATGCTGGGAGGAGCTGGGTTCCTGTGGC TGGGATGGACAGGCTTCAACGGTGGATCGCCATTTGCCGCAGGATTAATTGCTTCACTTGCCATTTTCAACACCCATCTCTGCACTGCCACCAGCATCCT GATCTGGATTTCCCTCGACATGATTGTCTACAAGAAGAGCTCGGTTGTCGGAGCTGTCCAGGGGATGATGACTGGACTTGTCTGCATCACACCTGGTGCG GGAGTAGTCGACCCGTGGACTGCTGTGTTGATGGGGGTGCTGTCAGGTTCATTTCCATGGTACACAATGATGGTATTGCATAAAAAATGGACCTTCTTCC AGATTGTAGATGACACACTCGCCGTGTTCCATACACACGCTGTGGCAGGTGTCATGGGAGGTGTCCTTTCTAGTCTCTTTGCGAAGCCGAAACTCCTCAG GATTGTGTACCCAAGCAGCACGTACGGATTCATTGCTGCATGGAATGTGGTAGTAACGAGCTTGATTTGCTTTGTAATTGGAAAGATTATAGATCTTAGG ATGAAGGAAGAGGACCTTGAGATTGGAGATGATGCAGTGCATGGTGAAGAAGCTTATGCACTGTGGGGAGATGAGGAAACGATGCTGAAGCCTCGTCGTC TGAACCCGAGAATACCTTCCTTTTGTTGGAGGCGAACATGA
AA sequence Show only first row Show all	>Lus10028397 pacid=23165986 polypeptide=Lus10028397 locus=Lus10028397.g ID=Lus10028397.BGIv1.0 annot-version=v1.0 MNNSDYINIPPLPSSLVTDEGSPNWLNKGDNAWQLIATNLVCIQSVPGLVILYGSVVKKKWAVNSAFMALYAFAAVLLCWVLWAHHMAFGSLGKSPLIAN PAFVPTESFLLERSKLGFVPMADFVFYQFAFAAITVILLAGSLLGRMNFYAWMLFVPLWLTFSYTVGAYAIWGGGFLEDCIIDYAGGFVIHLSSGVAGFT TAYWAVGPRHSQDRQHFPPNNIIHMLGGAGFLWLGWTGFNGGSPFAAGLIASLAIFNTHLCTATSILIWISLDMIVYKKSSVVGAVQGMMTGLVCITPGA GVVDPWTAVLMGVLSGSFPWYTMMVLHKKWTFFQIVDDTLAVFHTHAVAGVMGGVLSSLFAKPKLLRIVYPSSTYGFIAAWNVVVTSLICFVIGKIIDLR MKEEDLEIGDDAVHGEEAYALWGDEETMLKPRRLNPRIPSFCWRRT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10028397 [exp]	0	1
AT4G13450			Adenine nucleotide alpha hydro...		Lus10023716 [exp]	1.0	0.9339
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10041851 [exp]	1.4	0.9275
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Lus10014175 [exp]	3.2	0.9120
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10001010 [exp]	3.5	0.9165
AT2G34930			disease resistance family prot...		Lus10029483 [exp]	3.6	0.8526
AT2G44290			Bifunctional inhibitor/lipid-t...		Lus10017749 [exp]	4.2	0.9072
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10016715 [exp]	4.9	0.9147
AT4G13450			Adenine nucleotide alpha hydro...		Lus10014459 [exp]	5.2	0.8774
AT5G55490		GEX1, ATGEX1	gamete expressed protein 1 (.1...		Lus10002182 [exp]	6.5	0.8520
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10028354 [exp]	7.5	0.9025

Compare expression of checked genes

Lus10028397 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.