Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66050 256 / 6e-84 Wound-responsive family protein (.1.2) AT1G19660 113 / 8e-29 Wound-responsive family protein (.1.2) AT1G75380 107 / 2e-26 ATBBD1 bifunctional nuclease in basal defense response 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041852 [exp] 559 / 0 AT5G66050 261 / 2e-85 Wound-responsive family protein (.1.2) Lus10024277 [exp] 112 / 2e-28 AT1G75380 452 / 4e-161 bifunctional nuclease in basal defense response 1 (.1.2.3) Lus10007390 [exp] 102 / 3e-24 AT1G19660 412 / 3e-144 Wound-responsive family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G105900 [exp] 330 / 8e-113 AT5G66050 283 / 7e-94 Wound-responsive family protein (.1.2) Potri.002G032500 [exp] 114 / 4e-29 AT1G75380 495 / 4e-178 bifunctional nuclease in basal defense response 1 (.1.2.3) Potri.005G230600 [exp] 112 / 2e-28 AT1G75380 463 / 3e-165 bifunctional nuclease in basal defense response 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0671 [flax] [poplar] AAA_lid PF02151 [flax] [poplar] UVR UvrB/uvrC motif CL0671 [flax] [poplar] PF02577 [flax] [poplar] DUF151 Domain of unknown function (DUF151)
Representative CDS sequence Show only first row Show all	>Lus10028398 pacid=23166028 polypeptide=Lus10028398 locus=Lus10028398.g ID=Lus10028398.BGIv1.0 annot-version=v1.0 ATGGTCTCTCGATTCCACCTGCCGTCACTCTCCCGCTTCCAAACTGTCCCCAGCGATCATACGATTCCCGCCTCCTTAATTTCATCGTCATCGTCTTTGT CCCTACCTTCTCTTCACGCATTTCGATTGTGCTGCACGCATTCCCGTGCACGCCGACCTTTCCTCGTCTGCTGCAAATCATCTCGTGGAAGCTCCGTCGG CGATGATGGCGATGATCTCAACTTCCTCCCTGCCTCACTCCTCCTTCCAGAGACACTATCTCATCATCGAATGCGGAGGCAAGGCTTCCTGGATGAGATG ACGTGGCAGTCGTACAGTAAATTGTTTCCTTCCTCGCTCCAGGGGAGGGGGTTGACCAGAGCTGATCCTGGAACCCTTGGAATCGAATTCCTCCGTCGCT TTAAGAATCCTACCATCTTTCTTAGGATTTCTTGTGATGGCGACTTCTTGCTTCCGATTTCCGTCGGGGAGTTTGCCGTTGACAAGCTTCTGGATGCACT CCCTGGAGAGAGCAGTGGAGGTTGTCCGGATCATTTCCAGATAGTGAAGAATATTGTGGGAACGCTTGACCATGAAGTTAAAATGGTGAGGATCACTGAC AGAGTAGTGAATACTTACATCTCAAGATTATATATCGGCAAGCCAGGGGAAAAGGATATGCTAAGTATTGATACAAGGCCCTCAGATGCTTTAAGTTTGG CAGACAGATGCAAGGCTCCAATTTACGTAAGAAGGCAGATTGTGATTTCCGATGCGATCAAAATCGGTCATGGAATGGGTAGACCACGTGATTCAAGACC CGCGTACGATGTATCCCTAGACAGTGCTGAAGATAGTCCGGATTTACTTGTTGAGGAGCTTGTTCTTGTCAGGAATATGAATTTAGCTATAGACGAGGAG AGGTACAATGATGCGGCTAGGTTGAGGGACAGACTAATGGAGCTTCGTAAGTCAAGACAGGATTAA
AA sequence Show only first row Show all	>Lus10028398 pacid=23166028 polypeptide=Lus10028398 locus=Lus10028398.g ID=Lus10028398.BGIv1.0 annot-version=v1.0 MVSRFHLPSLSRFQTVPSDHTIPASLISSSSSLSLPSLHAFRLCCTHSRARRPFLVCCKSSRGSSVGDDGDDLNFLPASLLLPETLSHHRMRRQGFLDEM TWQSYSKLFPSSLQGRGLTRADPGTLGIEFLRRFKNPTIFLRISCDGDFLLPISVGEFAVDKLLDALPGESSGGCPDHFQIVKNIVGTLDHEVKMVRITD RVVNTYISRLYIGKPGEKDMLSIDTRPSDALSLADRCKAPIYVRRQIVISDAIKIGHGMGRPRDSRPAYDVSLDSAEDSPDLLVEELVLVRNMNLAIDEE RYNDAARLRDRLMELRKSRQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66050			Wound-responsive family protei...		Lus10028398 [exp]	0	1
AT5G02810		APRR7, PRR7	pseudo-response regulator 7 (....		Lus10019899 [exp]	7.5	0.8275
AT2G44770			ELMO/CED-12 family protein (.1...		Lus10003841 [exp]	7.5	0.8265
AT5G22450			unknown protein		Lus10004878 [exp]	7.9	0.8408
AT3G56680			Single-stranded nucleic acid b...		Lus10043439 [exp]	8.4	0.8058
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Lus10020930 [exp]	8.9	0.8169
AT5G48970			Mitochondrial substrate carrie...		Lus10006521 [exp]	10.5	0.7959
AT5G55600			agenet domain-containing prote...		Lus10007115 [exp]	12.0	0.8405
AT1G33360			ATP-dependent Clp protease (.1...		Lus10000933 [exp]	12.8	0.8109
AT3G53570		AME2, AFC1	FUS3-complementing gene 1 (.1....		Lus10025301 [exp]	17.7	0.8195
AT1G07480			Transcription factor IIA, alph...		Lus10001563 [exp]	19.8	0.8176

Compare expression of checked genes

Lus10028398 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.