Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66055 376 / 1e-126 EMB16, EMB2036, AKRP EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) AT5G40160 130 / 6e-34 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) AT2G14255 59 / 6e-09 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT2G03430 55 / 2e-08 Ankyrin repeat family protein (.1) AT5G53470 56 / 3e-08 ACBP1 acyl-CoA binding protein 1 (.1) AT4G27780 54 / 1e-07 ACBP2 acyl-CoA binding protein 2 (.1) AT1G60860 54 / 2e-07 AGD2 ARF-GAP domain 2 (.1) AT2G25600 53 / 4e-07 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT3G24530 50 / 3e-06 AAA-type ATPase family protein / ankyrin repeat family protein (.1) AT4G32500 49 / 8e-06 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041853 [exp] 706 / 0 AT5G66055 465 / 2e-162 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Lus10014522 [exp] 128 / 1e-32 AT5G40160 322 / 3e-109 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Lus10032165 [exp] 104 / 1e-24 AT5G40160 293 / 3e-98 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Lus10001799 [exp] 67 / 3e-11 AT5G13300 1201 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Lus10002572 [exp] 62 / 9e-10 AT5G13300 1149 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Lus10005910 [exp] 61 / 1e-09 AT4G27780 430 / 3e-151 acyl-CoA binding protein 2 (.1) Lus10022382 [exp] 57 / 1e-08 AT4G27780 432 / 2e-152 acyl-CoA binding protein 2 (.1) Lus10006559 [exp] 50 / 2e-06 AT3G04710 581 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10013859 [exp] 50 / 3e-06 AT2G17390 427 / 1e-150 ankyrin repeat-containing 2B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G060400 [exp] 408 / 4e-139 AT5G66055 462 / 2e-161 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Potri.005G105800 [exp] 387 / 5e-131 AT5G66055 457 / 3e-159 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Potri.001G295200 [exp] 115 / 1e-28 AT5G40160 317 / 4e-108 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Potri.003G103400 [exp] 57 / 1e-08 AT4G19150 234 / 2e-77 Ankyrin repeat family protein (.1.2) Potri.003G163200 [exp] 56 / 5e-08 AT5G13300 1146 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Potri.010G161300 [exp] 53 / 1e-07 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.012G017700 [exp] 52 / 4e-07 AT4G27780 432 / 4e-152 acyl-CoA binding protein 2 (.1) Potri.001G130500 [exp] 51 / 6e-07 AT4G19150 222 / 1e-72 Ankyrin repeat family protein (.1.2) Potri.015G105500 [exp] 52 / 9e-07 AT5G61980 1110 / 0.0 ARF-GAP domain 1 (.1) Potri.001G066800 [exp] 52 / 9e-07 AT5G13300 1192 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028399 pacid=23166140 polypeptide=Lus10028399 locus=Lus10028399.g ID=Lus10028399.BGIv1.0 annot-version=v1.0 ATGTCAGCGTCCGTCTCCTTGGTGGCTGGTGTTGGTGTCAATTGTGGATTGATGATGATGCGGTGTGATGGGGTCCTTGAGGTGTGTGGCAGTGATGAGG GTGCAGGACGGATTGCGGCCTTAGTGTTGAGGATGGGGATAGTGGTGATGGAGGTTTCATTGTTGGTGTTGGAGGCGAGGAGAGGTGGTGTGGCCATGGT GGCAGATGTGAGCATATTACGAATGGAAATGGCGGCACCACGAGCACCTCCGAACTTGCGCTCACCTTTGCTCTTCCCCATTCCTCTCAACTTCTCCTCA ATTCGACCAATCAACTTCCCTAGAAGGTTCCGCTCATTCTCCTCTTCCTTCCAATCCTCTTCTCTCATCACGGACGACGATCATGCCATCGGGGACTGTC TCGTCTTCGAAGAAGGCATATTCGAGGATCCCTATCTCGACGACGATACCGATTCCGTTCCCGATGCCCCGCCACCGGCCAAGGTCTCCCGCAAGAAAAA GAAGGCGGAGGTCCAGTGGGAGAACTTGGTCCCTGACGAGTGGATAGAAGTGCAGGCGGAAATTAACATTAACAAGAAGGAGAGGCGCAGAATTGCGCAG GAGCTGCAGCAGAATAGCCGGTTGGAGAGGAAGACCAGGGGTTTGACACCTATTAGGAACGTGAATTTGGAGGATTATGAGGCTTTCCGTGAGGCCAAGC GGGCTCAATTGAAGCCGCTGGTTCAAACTGAGGATAAAGACGAAGAAGAGGAAGAAGAAGAAGAAGGTTTGGATGAGGAAGGGTTTTACGACAGCGACGA GGATGAGGAAGGATTTGTTAATAGGAAGATTGAGCGAGTTGCGCCTATGAATCCGAGGTGGGCGGTTTACGGCAAGGGTTTTGAGCATGTTAATGAGTTC TTCAGGAGTAGCAAGTACAATCCTGGAGATAAGGATTCAGACGGCCGGCGCAAGTTGTTCACCAAAGAGGAAAAGGTTTTCCTCAACAGACGGATACCTG ATGTATCAGTTGCTACCTGTGTCAAATGGCAACCTCTTCACACACTTGCAGCATCTGGAGACTTCTATCTTATGAACATTTTACTGAAACATAACCTTGA CATCAATTCTGTAGATGCAGAGGGTGTGAGTGCTCTCCACAAAGCCATAATTGGTAAAAAGCAGGCAATCGCCAGCTATCTATTGAGAGAATCGGCAAAT CCCTTCATACGAGATGCAGATGGGGCTACCTTGATGCATTATGCTGTTCGGACCGCGTCCATTCCCGCCATCAAACTACTTCTCCTATATAACGTTGATA TAAACCTTCAGGACAATGATGGTTTAACCCCTCTGGAGCTCTGCCTTAATCTCGGACGAAACTCCAGGACTCTCGAGCTGATCAAGATGTTGAAGCTGTA TCCAAGGAAGTCCACTCCTGCTGCTGCTGCTTTGGCTAGAAAACTCAGCTCTGAACTGCCAAAATCAGTACCCGAAGATCATCGTTACTTCAGCTCCGGA TAA
AA sequence Show only first row Show all	>Lus10028399 pacid=23166140 polypeptide=Lus10028399 locus=Lus10028399.g ID=Lus10028399.BGIv1.0 annot-version=v1.0 MSASVSLVAGVGVNCGLMMMRCDGVLEVCGSDEGAGRIAALVLRMGIVVMEVSLLVLEARRGGVAMVADVSILRMEMAAPRAPPNLRSPLLFPIPLNFSS IRPINFPRRFRSFSSSFQSSSLITDDDHAIGDCLVFEEGIFEDPYLDDDTDSVPDAPPPAKVSRKKKKAEVQWENLVPDEWIEVQAEININKKERRRIAQ ELQQNSRLERKTRGLTPIRNVNLEDYEAFREAKRAQLKPLVQTEDKDEEEEEEEEGLDEEGFYDSDEDEEGFVNRKIERVAPMNPRWAVYGKGFEHVNEF FRSSKYNPGDKDSDGRRKLFTKEEKVFLNRRIPDVSVATCVKWQPLHTLAASGDFYLMNILLKHNLDINSVDAEGVSALHKAIIGKKQAIASYLLRESAN PFIRDADGATLMHYAVRTASIPAIKLLLLYNVDINLQDNDGLTPLELCLNLGRNSRTLELIKMLKLYPRKSTPAAAALARKLSSELPKSVPEDHRYFSSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66055		EMB16, EMB2036,...	EMBRYO DEFECTIVE 2036, EMBRYO ...		Lus10028399 [exp]	0	1
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10010385 [exp]	2.0	0.9373
AT5G36170		ATPRFB, HCF109	high chlorophyll fluorescent 1...		Lus10036446 [exp]	3.3	0.9178
AT2G18710		SCY1	SECY homolog 1 (.1)		Lus10023202 [exp]	3.9	0.9297
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Lus10032151 [exp]	5.1	0.9326
AT3G57180		BPG2	BRASSINAZOLE\(BRZ\) INSENSITIV...		Lus10035420 [exp]	6.1	0.8968
AT3G53700		MEE40	maternal effect embryo arrest ...		Lus10006373 [exp]	6.7	0.9271
AT3G19810			Protein of unknown function (D...		Lus10010214 [exp]	7.7	0.9286
AT4G27600		NARA5	GENES NECESSARY FOR THE ACHIE...		Lus10026867 [exp]	8.1	0.9270
AT5G66055		EMB16, EMB2036,...	EMBRYO DEFECTIVE 2036, EMBRYO ...		Lus10041853 [exp]	9.3	0.8752
AT3G25660			Amidase family protein (.1)		Lus10020781 [exp]	10.3	0.8883

Compare expression of checked genes

Lus10028399 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.