Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35785 155 / 3e-47 RNA-binding (RRM/RBD/RNP motifs) family protein AT1G07350 120 / 6e-35 SR45a serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G46020 57 / 7e-11 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G24770 60 / 1e-10 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT3G52150 58 / 3e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G06210 55 / 9e-10 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT1G60650 54 / 8e-09 AtRZ-1b AtRZ-1b, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) AT5G19030 53 / 1e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT2G21440 54 / 2e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G50250 53 / 3e-08 CP31B chloroplast RNA-binding protein 31B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041854 [exp] 182 / 1e-57 AT4G35785 179 / 6e-56 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10040705 [exp] 125 / 2e-34 AT1G07350 163 / 2e-46 serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10018202 [exp] 127 / 3e-34 AT1G07350 145 / 1e-41 serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017507 [exp] 119 / 2e-33 AT4G35785 123 / 4e-35 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10028776 [exp] 110 / 7e-30 AT4G35785 127 / 5e-36 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10040854 [exp] 61 / 3e-12 AT3G46020 112 / 1e-33 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10018277 [exp] 63 / 2e-11 AT4G19610 770 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Lus10040636 [exp] 63 / 2e-11 AT4G19610 700 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Lus10005891 [exp] 61 / 6e-11 AT3G45980 230 / 1e-76 HISTONE H2B, Histone superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G105700 [exp] 177 / 7e-56 AT4G35785 158 / 4e-48 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.003G130301 [exp] 133 / 4e-39 AT4G35785 145 / 3e-43 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.001G248100 [exp] 122 / 1e-33 AT1G07350 125 / 2e-35 serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G041700 [exp] 122 / 2e-33 AT4G35785 139 / 6e-39 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.001G101500 [exp] 99 / 2e-26 AT4G35785 97 / 1e-25 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.001G409800 [exp] 59 / 5e-11 AT5G54580 174 / 2e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G090200 [exp] 57 / 8e-10 AT4G24770 310 / 7e-105 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.011G130300 [exp] 56 / 1e-09 AT5G54580 161 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G038200 [exp] 54 / 4e-09 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G149600 [exp] 56 / 5e-09 AT4G19610 646 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10028400 pacid=23166136 polypeptide=Lus10028400 locus=Lus10028400.g ID=Lus10028400.BGIv1.0 annot-version=v1.0 ATGATCCATCATGTATCTTGGTCTTTCCCTTTCTCACTATCTCTCTGGATGTCTGACGTTTGCTGCTTCACTGGGTCCAGAAGCCGAGAGAGGACCGAGG TTGTTAATCCTGGAGATACTCTCTATGTGACTGGGTTATCTACAAGGGTAACTGAAAGGGAACTTGAAGACCATTTTTCAAAGGAGGGAAAGGTTGCATC TTGTCATCTTGTTGTGGAGCCCCGTACTCGCATTTCTCGTGGGTTTGCTTTTGTGACGATGGACAATGTTGATGATGCAAATCGCTGCGTTAAGTATCTC AACCATTCGGTTCTGGAGGGACGATATATAACTGTGGAAAAGTCACGAAGGAAACGTCCTAGGACTCCAACTCCAGGACATTATCTTGGTCTAAAGAGCA CAAGGGATGATGGGCCTCGCGATCGTGATCGTGACCGCGGTAGATACCGTGGTGTTGGCAGCAGTGGCTATGACGACTACCGTAGGTCACCGAGGCATGA TGAGTACCGCAGGTCTCCAAGGCGGTCCCCGTACAGAGGTGGCCGCGAGTATTCTCCTCCGAGGCATTCTCCCTACGGTGGCGGGAGGTCGAGGAGGTAC CGGTCCAGGTCTCCTTAA
AA sequence Show only first row Show all	>Lus10028400 pacid=23166136 polypeptide=Lus10028400 locus=Lus10028400.g ID=Lus10028400.BGIv1.0 annot-version=v1.0 MIHHVSWSFPFSLSLWMSDVCCFTGSRSRERTEVVNPGDTLYVTGLSTRVTERELEDHFSKEGKVASCHLVVEPRTRISRGFAFVTMDNVDDANRCVKYL NHSVLEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDDGPRDRDRDRGRYRGVGSSGYDDYRRSPRHDEYRRSPRRSPYRGGREYSPPRHSPYGGGRSRRY RSRSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Lus10028400 [exp]	0	1
					Lus10011007 [exp]	5.6	0.8536
AT5G40280		ATFTB, WIG, ERA...	WIGGUM, ENHANCED RESPONSE TO A...		Lus10014536 [exp]	15.1	0.7926
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Lus10041854 [exp]	21.2	0.8344
AT5G57230			Thioredoxin superfamily protei...		Lus10003582 [exp]	21.6	0.8393
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10025280 [exp]	22.4	0.8443
AT4G33100			unknown protein		Lus10014752 [exp]	25.8	0.8034
AT5G19830			Peptidyl-tRNA hydrolase family...		Lus10014589 [exp]	31.5	0.8214
AT1G32730			unknown protein		Lus10040132 [exp]	33.1	0.8122
AT3G62330			Zinc knuckle (CCHC-type) famil...		Lus10010000 [exp]	33.8	0.8139
AT4G33100			unknown protein		Lus10033863 [exp]	39.6	0.8147

Compare expression of checked genes

Lus10028400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.