Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35790 1050 / 0 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) AT2G42010 764 / 0 PLDBETA1 phospholipase D beta 1 (.1) AT4G11840 749 / 0 PLDGAMMA3 phospholipase D gamma 3 (.1) AT4G00240 748 / 0 PLDBETA2 phospholipase D beta 2 (.1) AT4G11850 743 / 0 PLDGAMMA1, MEE54 maternal effect embryo arrest 54, phospholipase D gamma 1 (.1) AT4G11830 734 / 0 PLDGAMMA2 phospholipase D gamma 2 (.1.2) AT3G15730 630 / 0 PLDALPHA1 phospholipase D alpha 1 (.1) AT1G52570 615 / 0 PLDALPHA2 phospholipase D alpha 2 (.1) AT5G25370 594 / 0 PLDALPHA3 phospholipase D alpha 3 (.1) AT1G55180 455 / 6e-151 PLDALPHA4, PLDEPSILON phospholipase D alpha 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041855 [exp] 1342 / 0 AT4G35790 1280 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10004156 [exp] 966 / 0 AT4G35790 1079 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10001293 [exp] 948 / 0 AT4G35790 1071 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10012699 [exp] 947 / 0 AT4G35790 1075 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10005627 [exp] 927 / 0 AT4G35790 969 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10006819 [exp] 759 / 0 AT2G42010 1465 / 0.0 phospholipase D beta 1 (.1) Lus10005782 [exp] 751 / 0 AT2G42010 1456 / 0.0 phospholipase D beta 1 (.1) Lus10014146 [exp] 712 / 0 AT2G42010 1254 / 0.0 phospholipase D beta 1 (.1) Lus10006718 [exp] 712 / 0 AT2G42010 1264 / 0.0 phospholipase D beta 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G105600 [exp] 1086 / 0 AT4G35790 1289 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.007G060300 [exp] 1082 / 0 AT4G35790 1281 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.002G016100 [exp] 1029 / 0 AT4G35790 1194 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G246000 [exp] 1000 / 0 AT4G35790 1170 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.003G015000 [exp] 938 / 0 AT4G35790 1088 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.014G074700 [exp] 760 / 0 AT2G42010 1464 / 0.0 phospholipase D beta 1 (.1) Potri.002G152100 [exp] 758 / 0 AT2G42010 1438 / 0.0 phospholipase D beta 1 (.1) Potri.001G112100 [exp] 728 / 0 AT2G42010 1307 / 0.0 phospholipase D beta 1 (.1) Potri.018G131200 [exp] 636 / 0 AT1G52570 1204 / 0.0 phospholipase D alpha 2 (.1) Potri.001G193000 [exp] 627 / 0 AT1G52570 1412 / 0.0 phospholipase D alpha 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0479 [flax] [poplar] PLD PF00614 [flax] [poplar] PLDc Phospholipase D Active site motif CL0479 [flax] [poplar] PF12357 [flax] [poplar] PLD_C Phospholipase D C terminal
Representative CDS sequence Show only first row Show all	>Lus10028401 pacid=23165987 polypeptide=Lus10028401 locus=Lus10028401.g ID=Lus10028401.BGIv1.0 annot-version=v1.0 ATGGTTACGCTGTATCAGGATGCTCATGTTCCTGATAACATGTTGCCGGAGATTCAAATTGACAGCGGTAAGGTTTATAAGCAGCCTAAGTGCTGGGAGG ACATTTGCTATGCCATCTCCGAGGCTCACCATATGATCTACATTGTGGGATGGTCTGTTTTCCATAAGATTAAGCTGGTTAGAGAGCCCACTAGGCCATT GCCTAGAGGAGGGGATCTGACTCTTGGTGAGTTGCTCAAGTATAAATCCGAAGAAGGTGTGAGGGTTCTGTTGCTGGTTTGGGATGACAAAACCTCTCAT GATAAATTCGGCCTCCGTACCGCGGGAGTGATGGCGACTCATGATGAAGAGACCCGAAAGTTTTTCAAGCATTCTTCAGTTATCTGCGTCTTGTCTCCTC GATATGCCAGCAGCAAGCTTAGTGTTGTGAAACAGCATGTCGTTGGAAGTGTCTTCACACATCATCAAAAATGTGTTATTGTGGACACACAGGCTTCTGG TAACAACAGGAAGTTAACTGCATTTGTTGGAGGTCTTGATCTTTGTGATGGGCGATATGACACTCCTGAGCATCGTCTGTTTCATGATCTTGATACTTGC TTCAAGGATGATTTCCACAATCCTACCTTTGCTGCTGGGACAAATGCACCTAGGCAGCCATGGCACGATTTGCATTCTAGGATTGATGGGCCTGCTGCAT ACGATGTTCTTATAAACTTTGAGCAGCGTTGGAGGAAAGCAACAAAGTGGAGGGAGTTTGGACTTCGTTTAAAAAAAAAGATGTCACATTGGAACGATGA TGCTCTTATAAAGGTAGAAAGAATCTCATGGATAATAAGTCCTGCCCTTAAAGTAACAAAAGAAGGTATGACAATAATTCCTCAAGATGATCCCATTGTA CATGTCTGTCGCGAAGATGATCCTGAAAACTGGCATGTTCAGATTTTCCGGTCCATAGACTCTGGATCCTTGAAGGGCTTTCCTAAGACTATTGGTAAAT GTCAGCAAATGAACCTCACTTGTTCAAAAAAGCTGGTGATAGATAAAAGCATACAGACAGCATATATCCAGGCAATCAGATCTGCACAACATTTCATATA CATTGAGAATCAGTATTTTCTCGGATCATCTTATGGCTGGCCTTCATACCAAAATGCAGGAGCCGATAACCTAATACCAATGGAGCTCGCATTGAAGATT GCGGAGAAAATTAGAGCCCGAGAGAGATTTGCAGTGTATGTTGTTGTACCAATGTGGCCTGAAGGAGACCCGAAGTCTGAAGTTGTGCAAGAGATTCTGT TTTGGCAGAGCCAGACCGTTAGCATGATGTACAATGTAGTGGCAAATGAGCTAAAGTCTATGCAACTTCAGGAAAACCCTCAGGACTACCTCAATTTCTA TTGCATTGGTAAGACCGAGGAAGCTCCGCCAGAAATGTCGAATGGTACTAATGGTCAACAGGTCTGCGAAGCCACAAAACATCAACGCTTCATGATTTAC GTTCATGCAAAGGGCATGGTGGTGGACGATGAGTATGTAATCATAGGATCGGCCAATATCAACCAAAGATCCATGGCTGGCACCAAAGACACCGAGATTG CCATGGGTGCATATCAACCACATCATGCTTGGGCTGTGAAGAAAAGACATCCTCTTGGCCAGATCTACGGATACAGAATGTCTCTATGGGCGGAGCATCT CGGTGGATTACAGGAGACATACGAAGATCCAGAAAGCTTGGAATGCGTGAGAACCGTAAATAACATTGCTGAAGAGAACTGGAAGAGATTCTCAGCTCCC AGTTTTGAAAAATTGCAGGGACATCTGCTCAAGTATCCATACCAAGTTGACCTGGATGGGGTTGTAACCCCACTCCCGGGAAGTGAGACCTTCCCCGATG TCGGTGGCAGTGTCATCGGAGCTCATTCGATTAAGATCCCTGACATCCTGACGACGTGA
AA sequence Show only first row Show all	>Lus10028401 pacid=23165987 polypeptide=Lus10028401 locus=Lus10028401.g ID=Lus10028401.BGIv1.0 annot-version=v1.0 MVTLYQDAHVPDNMLPEIQIDSGKVYKQPKCWEDICYAISEAHHMIYIVGWSVFHKIKLVREPTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSH DKFGLRTAGVMATHDEETRKFFKHSSVICVLSPRYASSKLSVVKQHVVGSVFTHHQKCVIVDTQASGNNRKLTAFVGGLDLCDGRYDTPEHRLFHDLDTC FKDDFHNPTFAAGTNAPRQPWHDLHSRIDGPAAYDVLINFEQRWRKATKWREFGLRLKKKMSHWNDDALIKVERISWIISPALKVTKEGMTIIPQDDPIV HVCREDDPENWHVQIFRSIDSGSLKGFPKTIGKCQQMNLTCSKKLVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYGWPSYQNAGADNLIPMELALKI AEKIRARERFAVYVVVPMWPEGDPKSEVVQEILFWQSQTVSMMYNVVANELKSMQLQENPQDYLNFYCIGKTEEAPPEMSNGTNGQQVCEATKHQRFMIY VHAKGMVVDDEYVIIGSANINQRSMAGTKDTEIAMGAYQPHHAWAVKKRHPLGQIYGYRMSLWAEHLGGLQETYEDPESLECVRTVNNIAEENWKRFSAP SFEKLQGHLLKYPYQVDLDGVVTPLPGSETFPDVGGSVIGAHSIKIPDILTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10028401 [exp]	0	1
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10028402 [exp]	1.0	0.9441
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10007760 [exp]	1.7	0.9077
AT2G45900			Phosphatidylinositol N-acetygl...		Lus10042850 [exp]	3.9	0.9009
AT5G47900			Protein of unknown function (D...		Lus10000090 [exp]	4.9	0.8833
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Lus10002876 [exp]	5.1	0.9123
AT5G47900			Protein of unknown function (D...		Lus10014112 [exp]	6.7	0.8828
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Lus10037888 [exp]	6.9	0.9025
AT5G02010		ATROPGEF7, ROPG...	RHO guanyl-nucleotide exchange...		Lus10022601 [exp]	7.5	0.8676
AT4G18490			unknown protein		Lus10021779 [exp]	8.1	0.8774
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10025955 [exp]	9.4	0.8662

Compare expression of checked genes

Lus10028401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.