Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35790 123 / 3e-33 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) AT4G11850 67 / 2e-13 PLDGAMMA1, MEE54 maternal effect embryo arrest 54, phospholipase D gamma 1 (.1) AT4G00240 64 / 2e-12 PLDBETA2 phospholipase D beta 2 (.1) AT4G11830 62 / 6e-12 PLDGAMMA2 phospholipase D gamma 2 (.1.2) AT4G11840 62 / 9e-12 PLDGAMMA3 phospholipase D gamma 3 (.1) AT2G42010 62 / 1e-11 PLDBETA1 phospholipase D beta 1 (.1) AT3G07940 48 / 5e-07 Calcium-dependent ARF-type GTPase activating protein family (.1) AT3G15730 42 / 0.0001 PLDALPHA1 phospholipase D alpha 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041855 [exp] 222 / 2e-68 AT4G35790 1280 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10012699 [exp] 87 / 2e-20 AT4G35790 1075 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10001293 [exp] 87 / 2e-20 AT4G35790 1071 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10014146 [exp] 62 / 1e-11 AT2G42010 1254 / 0.0 phospholipase D beta 1 (.1) Lus10006718 [exp] 61 / 2e-11 AT2G42010 1264 / 0.0 phospholipase D beta 1 (.1) Lus10026375 [exp] 61 / 4e-11 AT2G42010 1154 / 0.0 phospholipase D beta 1 (.1) Lus10006819 [exp] 59 / 1e-10 AT2G42010 1465 / 0.0 phospholipase D beta 1 (.1) Lus10005782 [exp] 57 / 5e-10 AT2G42010 1456 / 0.0 phospholipase D beta 1 (.1) Lus10026377 [exp] 53 / 1e-08 AT2G42010 838 / 0.0 phospholipase D beta 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G060300 [exp] 101 / 1e-25 AT4G35790 1281 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G246000 [exp] 99 / 1e-24 AT4G35790 1170 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.002G016100 [exp] 99 / 2e-24 AT4G35790 1194 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G105600 [exp] 98 / 3e-24 AT4G35790 1289 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.003G015000 [exp] 91 / 9e-22 AT4G35790 1088 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.001G112100 [exp] 67 / 1e-13 AT2G42010 1307 / 0.0 phospholipase D beta 1 (.1) Potri.014G074700 [exp] 66 / 5e-13 AT2G42010 1464 / 0.0 phospholipase D beta 1 (.1) Potri.002G152100 [exp] 63 / 4e-12 AT2G42010 1438 / 0.0 phospholipase D beta 1 (.1) Potri.006G253900 [exp] 48 / 7e-07 AT3G15730 1144 / 0.0 phospholipase D alpha 1 (.1) Potri.003G198301 [exp] 42 / 7e-05 AT3G07940 503 / 7e-178 Calcium-dependent ARF-type GTPase activating protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10028402 pacid=23166124 polypeptide=Lus10028402 locus=Lus10028402.g ID=Lus10028402.BGIv1.0 annot-version=v1.0 ATGGCCGGCGACGATTCCGCCAGCCCTAGGGTCATCTACCTCCACGGCGACCTCGAACTCCACATCATCGAAGCCCGGCGGCTCCGGCCCCCAAACTTGG CCTTAGCCTCCGAGCGCCTCCGCCGCTGTTTCGCCCCTTGCAACTTCTGCGCCGCTCCTCCCGCCACATCCGACGCCGAAAACGGAGGAGAACCCCGCGA CTCCAAACTTCACGAGCACAGGAACATCATCACTACCGACTCCTACGTCACTGTCGTCGTCCCCCAAGCCACCGTCGCCCGCACTCACGTCGTCAAGAAC TCCCAAAACCCTAGGTGGGACTACCGCTTCTTCATCCAACTCGCGCATCCTATGGCCGAGCTCGAATTCCACGTCAAGGACGACGACGTCCGGTCTACCG ACACGGCATTGCCGGTGATCCTTCTCATGGTGGCGTCAGGCAGGCTTACTTCCCTTTGA
AA sequence Show only first row Show all	>Lus10028402 pacid=23166124 polypeptide=Lus10028402 locus=Lus10028402.g ID=Lus10028402.BGIv1.0 annot-version=v1.0 MAGDDSASPRVIYLHGDLELHIIEARRLRPPNLALASERLRRCFAPCNFCAAPPATSDAENGGEPRDSKLHEHRNIITTDSYVTVVVPQATVARTHVVKN SQNPRWDYRFFIQLAHPMAELEFHVKDDDVRSTDTALPVILLMVASGRLTSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10028402 [exp]	0	1
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10028401 [exp]	1.0	0.9441
AT2G45900			Phosphatidylinositol N-acetygl...		Lus10042850 [exp]	2.8	0.9059
AT2G27900			unknown protein		Lus10009613 [exp]	2.8	0.9170
AT2G20010			Protein of unknown function (D...		Lus10012970 [exp]	3.5	0.9033
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10007760 [exp]	5.1	0.8859
AT1G22060			unknown protein		Lus10037927 [exp]	6.3	0.9053
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Lus10037888 [exp]	8.8	0.9033
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Lus10003407 [exp]	8.8	0.9109
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10015889 [exp]	11.0	0.8989
AT5G47900			Protein of unknown function (D...		Lus10000090 [exp]	13.2	0.8714

Compare expression of checked genes

Lus10028402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.