Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35800 945 / 0 RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS, NRPB1 RNA polymerase II large subunit (.1) AT5G60040 311 / 4e-87 NRPC1 nuclear RNA polymerase C1 (.1.2) AT3G57660 171 / 1e-42 NRPA1 nuclear RNA polymerase A1 (.1) ATCG00180 112 / 7e-25 ATCG00180.1, RPOC1 DNA-directed RNA polymerase family protein (.1) AT2G40030 105 / 3e-22 NRPE1, DMS5, ATNRPD1B, DRD3, NRPD1b DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) AT1G63020 100 / 7e-21 SMD2, PolIVa, SDE4, NRPD1a SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) ATCG00170 52 / 3e-06 ATCG00170.1, RPOC2 DNA-directed RNA polymerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041856 [exp] 1050 / 0 AT4G35800 2541 / 0.0 RNA polymerase II large subunit (.1) Lus10013536 [exp] 300 / 1e-83 AT5G60040 1506 / 0.0 nuclear RNA polymerase C1 (.1.2) Lus10015971 [exp] 278 / 4e-76 AT5G60040 1745 / 0.0 nuclear RNA polymerase C1 (.1.2) Lus10011299 [exp] 161 / 1e-39 AT3G57660 1801 / 0.0 nuclear RNA polymerase A1 (.1) Lus10040493 [exp] 159 / 7e-39 AT3G57660 1802 / 0.0 nuclear RNA polymerase A1 (.1) Lus10002748 [exp] 120 / 4e-27 AT2G40030 1773 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Lus10006339 [exp] 102 / 3e-21 AT1G63020 1343 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Lus10002955 [exp] 101 / 4e-21 AT1G63020 1326 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Lus10000051 [exp] 71 / 4e-14 AT5G60040 224 / 5e-69 nuclear RNA polymerase C1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G107600 [exp] 969 / 0 AT4G35800 2836 / 0.0 RNA polymerase II large subunit (.1) Potri.001G341900 [exp] 305 / 7e-85 AT5G60040 1858 / 0.0 nuclear RNA polymerase C1 (.1.2) Potri.006G055300 [exp] 166 / 5e-41 AT3G57660 1890 / 0.0 nuclear RNA polymerase A1 (.1) Potri.003G196900 [exp] 140 / 5e-33 AT2G40030 1843 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Potri.001G027232 [exp] 114 / 3e-25 AT2G40030 1596 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Potri.001G111300 [exp] 114 / 3e-25 AT1G63020 1443 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Potri.013G140850 [exp] 107 / 3e-23 ATCG00180 1181 / 0.0 DNA-directed RNA polymerase family protein (.1) Potri.019G028000 [exp] 92 / 7e-20 ATCG00180 516 / 0.0 DNA-directed RNA polymerase family protein (.1) Potri.013G140260 [exp] 50 / 1e-05 ATCG00170 2104 / 0.0 DNA-directed RNA polymerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04992 [flax] [poplar] RNA_pol_Rpb1_6 RNA polymerase Rpb1, domain 6 PF04998 [flax] [poplar] RNA_pol_Rpb1_5 RNA polymerase Rpb1, domain 5 PF04997 [flax] [poplar] RNA_pol_Rpb1_1 RNA polymerase Rpb1, domain 1 PF04990 [flax] [poplar] RNA_pol_Rpb1_7 RNA polymerase Rpb1, domain 7 PF05001 [flax] [poplar] RNA_pol_Rpb1_R RNA polymerase Rpb1 C-terminal repeat PF00623 [flax] [poplar] RNA_pol_Rpb1_2 RNA polymerase Rpb1, domain 2
Representative CDS sequence Show only first row Show all	>Lus10028403 pacid=23166024 polypeptide=Lus10028403 locus=Lus10028403.g ID=Lus10028403.BGIv1.0 annot-version=v1.0 ATGGACATCCGATTTCCATTCTCGCCGGCGGAAGTCGCCAAAGTCCGATGCGTTCAGTTTGGCATCCTCAGCCCTGACGAGATCAGGCAAATGTCCGTTG TCCAGATTGAGCATAGTGAGACTACAGAACGGGGAAAGCCCAAGGTAGCAGGTCTCAGTGATCCTCGGTTGGGAACAATTGACAGGAAAATGAAGTGTGA GACTTGTGCTGCGAACATGGCGGAATGTCCTGGGCACTTTGGACACCTGGAGCTTGCCAAACCCATGTATCATGTTGGGTTCATGAAGACCGTGCTTGCC ATAATGAGATGTGTTTGCTTCAATTGTTCGAAGATTCTTGTTGACGAGGATGATCACAAATTTAAACAAGCCATGAAAATAAGAAACCCAAAAAACAGAC TTAGAAAAATTCAAGAAGCTTGCAAAAACAAGAAGAAGTGTGAAGGTGGGGATGAAATCGAGTCCCGGAATCAAGACGACGATGCGCCACTGAAGAAAAG CCGTGGCGGATGTGGCGCTAATCAACCAAATATTACAATTGAAGGTATGAAGATGAATGCCGAATTTAAGCAACAAAAGAAGAAAAGCGATGACCAGGAC CAAATGCCTGAACCCGTGGAGAGGAAACAGACACTTACAGCAGAAAGAGTCCTTAGTGTTCTCAAGCGAATAAGTGACGAGGATTGCCTACTTTTGGGGC TGAATCCTAAGTATGCACGTCCGGACTGGATGATCCTTCAAGTTCTTCCAATTCCACCACCTCCTGATGATCTTACTCATCAGTTGGCTATGATTATCAG ACACAATGAGCATCTAAGAAGACAGGATTCCAGTGGGGCTCCTGCACACATCTTATCTGAATATGCACAATTGCTGCAATTTCACGTTGCCACATATTTC GACAATGAGTTGCCTGGACAGCCAAGGGCTACTCAGAGATCAGGGAGACCGATTAAATCAATATGCAGTAGGCTTAAGGCTAAAGAGGGTCGTATTAGGG GCAACTTAATGGGAAAACGTGTTGACTTCTCTGCTCGTACAGTCATTACTCCTGATCCTACCATCAACATTGATCAGCTTGGAGTACCATGGAGTATTGC CTTGAATCTCACTTATCCCGAAACTGTTACTCCATATAACATTGAAAGGCTAAAGGAACTTGTTCAAAATGGACCCCATCCTCCTCCTGGTAAAACTGGT GCAAAATATATAATAAGGGATGATGGTCAGAGACTTGACCTTCGGTACCTGAAGAAAAGTAGTGATAATCATCTGGAGCTAGGTTACAAGGTTGAGCGGC ATTTAAATGATGGTGACTTTGTTCTTTTCAATCGACAACCCAGTCTCCATAAAATGTCCATCATGGGTCACCGAATCAAGATCATGCCATATTCAACTTT CCGCTTGAACTTGTCTGTTACTTCTCCATATAATGCCGACTTCGATGGCGATGAAATGAATATGCACGTGCCACAATCATTTGAAACCCGAGCTGAAGTG TTGGAGCTAATGATGGTGCCAAAGTGCATTGTTTCCCCTCAGGCTAACAGGCCTGTCATGGGAATTGCTGTTGAAGCTGTTGATAAGCTGCAGGAAAGGT TAAAAGTTGTTCCTGGTGATGATCCGTTGAGTGTGGAAGCTCAAAAAAATGCTACTCTCTTCTTTTCAATCTTGCTCCGTAGCACACTGGCAAGTAAGAG GGTGCTACAGGAATACAGGCTCAGCCGTGAAGCTTTTGATTGGGTTATTGGTGAAATAGAGTCCCGTTTCTTGCAATCACTGGTGGCACCAGGCGAAATG ATTGGTTGTGTTGCAGCGCAGTCCATTGGAGAGCCTGCTACTCAGATGACTCTGAATACTTTTCACTATGCTGGTGTTAGTGCAAAGAATGTCACCCTTG GTGTTCCCAGGTTGAGGGAGATTATTAACGTAGCTAAGAACATAAAGACCCCATCTCTTTCTGTTTTTCTTCACTCCGACTGTAGCCAGACAAAGGAGAG AGCTAAAAATGTGCAATGTGCCCTGGAGTATACTACCCTGCGGAGTGTTACACAGGCTACAGAAGTTTGGTATGACCCGGATCCTACAAGTACAATCATT GAAGAAGATGCTGATTTTGTGAGATCTTATTATGAGATGCCAGATGAAGAGGTTGCACCTGAAAAGATATCTCCTTGGCTGCTTCGCATAGAGTTGAATC GTGAAATGATGGTTGATAAGAAGCTGAACATGGCTGACATTGCAGCGAAAATCAATCAAGAGTTCGACGATGATTTAACTTGCATTTTCAATGATGACAA TGCTGAAAAACTCATTCTTCGTATCCGTATCATGAATGATGAAGCCCCAAAGGGGGAGTTAGATTCTTCAGCTGAAGATGATGTTTTCTTGAAGAGAATT GAGAGTAACATGCTGACGGAAATGGCTCTGAGAGGTATTCCAGATATCAACAAAGTCTTCATTAAACATGGTAAAGTAAGCAAGTTTGATAAGAATGAGG GGTTTAGAACAGTGGAGGAGTGGATGCTGGATACAGAAGGTGTCAATCTCTTGGCAGTCATGTGCCATGAAAGTGTTGATGCCCAAAGGACAAGCAGCAA TCACTTGATCGAAGTAATTGAAGTGATTGGTATTGAGGCCGTACGACGTTCTCTCCTGGACGAGCTGCGTGTTGTTATATCTTTCGATGGATCATATGTG AACTACAGGCATCTTGCTATATTGTGTGATACCATGACATATAGAGGTCATTTAATGGCAATTACCCGGCACGGTATCAACAGGAATGATACCGGTCCAA TGATGAGGTGCTCGTTTGAAGAAACTGTCGACATTCTCCTTGATGCCGCAGTTTATGCAGAGTCGGATTACTTGAGGGGTGTGACAGAGAATATAATGCT GGGTCAGCTTGCACCTATCGGCACTGGTGGCTGTGCCTTGTATCTGAATGATGAAATGTTGAAGAATGCTATTGAATTGCAGCTGCCCAGCTACATGGAA GGTCTGGATTTCGGCACAACACCTGGGCGTTCTCCAATATCAGGGACTCCTTATCACGATGGCATGATGTCTCCTAACTATTTGCTGAGCCCAAGTATGC GCCTCTCACCTGTGTCGGATGCTCAATTTTCACCCTACGTTGGTGGGATGGCATTTTCACCGGCTTCATCGCCGGGATACAGTCCGTCATCTCCAGGATA CAGTCCTTCTTCTCCAGGGTACAGCCCCACATCTCCTGGGTACAGCCCCACATCTCCTGGGTACAGCCCAACCTCTCCGGGATACAGTCCTACTTCGCCG ACTTATAGTCCGAGCTCTCCCGGCTATAGCCCGACAAGTCCGGCCTATTCTCCTACAAGCCCGTCGTACTCTCCGACCTCTCCAAGCTATAGTCCGACCT CTCCGAGCTATAGTCCTACATCTCCGAGCTATAGCCCGACATCTCCGAGCTATAGCCCGACGTCGCCGGCTTACAGCCCGACATCACCGGCTTACTCCCC GACGTCTCCGAGCTACAGTCCGACGTCTCCGAGCTACAGTCCGACGTCTCCTAGCTACAGCCCGACGTCTCCTAGCTACAGCCCGACGTCTCCTAGCTAC AGCCCGACGTCTCCAGCATATAGCCCGACTTCGCCGGGATACAGCCCAACGTCGCCGAGCTATAGCCCGACTTCACCAAGTTACAATCCACAGTCGGCAA AGTACAGTCCCTCGGTTGCATATTCACCAAGCAGTCCCAGATTATCTCCAGCTAGTCCTTACAGTCCTACCTCTCCAAGCTATAGTCCCACGTCGCCCTC ATACTCGCCGACATCTCCGTCGTATTCCCCATCGAGCCCGGCGTACAGTCCCAGCAGTCCTTATAATTCAGCTGTGATTCCGGATTACAGTCCAAGCTCC CCTCAGTACAGCCCAAGTGCAGGGTATTCACCAAGTGCTCCGGGGTATTCACCTTCATCTACCGGTCAGTACACGCCTCAGCCAAGTGCCAAGGGTGACG GGAAAGACAGGGACGGCAAAAAGTAG
AA sequence Show only first row Show all	>Lus10028403 pacid=23166024 polypeptide=Lus10028403 locus=Lus10028403.g ID=Lus10028403.BGIv1.0 annot-version=v1.0 MDIRFPFSPAEVAKVRCVQFGILSPDEIRQMSVVQIEHSETTERGKPKVAGLSDPRLGTIDRKMKCETCAANMAECPGHFGHLELAKPMYHVGFMKTVLA IMRCVCFNCSKILVDEDDHKFKQAMKIRNPKNRLRKIQEACKNKKKCEGGDEIESRNQDDDAPLKKSRGGCGANQPNITIEGMKMNAEFKQQKKKSDDQD QMPEPVERKQTLTAERVLSVLKRISDEDCLLLGLNPKYARPDWMILQVLPIPPPPDDLTHQLAMIIRHNEHLRRQDSSGAPAHILSEYAQLLQFHVATYF DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVQNGPHPPPGKTG AKYIIRDDGQRLDLRYLKKSSDNHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV LELMMVPKCIVSPQANRPVMGIAVEAVDKLQERLKVVPGDDPLSVEAQKNATLFFSILLRSTLASKRVLQEYRLSREAFDWVIGEIESRFLQSLVAPGEM IGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVFLHSDCSQTKERAKNVQCALEYTTLRSVTQATEVWYDPDPTSTII EEDADFVRSYYEMPDEEVAPEKISPWLLRIELNREMMVDKKLNMADIAAKINQEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELDSSAEDDVFLKRI ESNMLTEMALRGIPDINKVFIKHGKVSKFDKNEGFRTVEEWMLDTEGVNLLAVMCHESVDAQRTSSNHLIEVIEVIGIEAVRRSLLDELRVVISFDGSYV NYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYME GLDFGTTPGRSPISGTPYHDGMMSPNYLLSPSMRLSPVSDAQFSPYVGGMAFSPASSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSP TYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY SPTSPAYSPTSPGYSPTSPSYSPTSPSYNPQSAKYSPSVAYSPSSPRLSPASPYSPTSPSYSPTSPSYSPTSPSYSPSSPAYSPSSPYNSAVIPDYSPSS PQYSPSAGYSPSAPGYSPSSTGQYTPQPSAKGDGKDRDGKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Lus10028403 [exp]	0	1
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Lus10041856 [exp]	1.0	0.9801
AT5G22760			PHD finger family protein (.1)		Lus10009383 [exp]	2.8	0.9551
AT5G22760			PHD finger family protein (.1)		Lus10020532 [exp]	3.0	0.9533
AT1G79730		ELF7	EARLY FLOWERING 7, hydroxyprol...		Lus10037558 [exp]	6.7	0.9166
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10041322 [exp]	6.9	0.9491
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10007206 [exp]	9.2	0.9369
					Lus10021651 [exp]	9.2	0.9431
AT5G05240			Uncharacterised conserved prot...		Lus10029030 [exp]	10.6	0.9131
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Lus10027713 [exp]	10.8	0.8962
AT4G24680		MOS1	modifier of snc1 (.1)		Lus10001246 [exp]	11.0	0.9393

Compare expression of checked genes

Lus10028403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.