Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35830 1652 / 0 ACO1 aconitase 1 (.1.2) AT2G05710 1605 / 0 ACO3 aconitase 3 (.1) AT4G26970 1463 / 0 ACO2 aconitase 2 (.1) AT5G54950 92 / 1e-22 Aconitase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041858 [exp] 1800 / 0 AT4G35830 1695 / 0.0 aconitase 1 (.1.2) Lus10015116 [exp] 1585 / 0 AT2G05710 1707 / 0.0 aconitase 3 (.1) Lus10031561 [exp] 1578 / 0 AT2G05710 1674 / 0.0 aconitase 3 (.1) Lus10027165 [exp] 1576 / 0 AT2G05710 1706 / 0.0 aconitase 3 (.1) Lus10039678 [exp] 1570 / 0 AT2G05710 1704 / 0.0 aconitase 3 (.1) Lus10040070 [exp] 1499 / 0 AT2G05710 1620 / 0.0 aconitase 3 (.1) Lus10021533 [exp] 1417 / 0 AT2G05710 1523 / 0.0 aconitase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G108100 [exp] 1664 / 0 AT4G35830 1668 / 0.0 aconitase 1 (.1.2) Potri.007G060900 [exp] 1652 / 0 AT4G35830 1658 / 0.0 aconitase 1 (.1.2) Potri.014G153400 [exp] 1588 / 0 AT2G05710 1695 / 0.0 aconitase 3 (.1) Potri.002G229200 [exp] 1575 / 0 AT2G05710 1674 / 0.0 aconitase 3 (.1) Potri.015G130201 [exp] 132 / 6e-36 AT4G35830 145 / 2e-41 aconitase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [flax] [poplar] Leu-IlvD PF00694 [flax] [poplar] Aconitase_C Aconitase C-terminal domain CL0364 [flax] [poplar] PF00330 [flax] [poplar] Aconitase Aconitase family (aconitate hydratase)
Representative CDS sequence Show only first row Show all	>Lus10028405 pacid=23165978 polypeptide=Lus10028405 locus=Lus10028405.g ID=Lus10028405.BGIv1.0 annot-version=v1.0 ATGGTGAGCGAAAACCCTTTCAATCGCATCCTCAAGACACTCGAGAAGCCCGATGGTGGTGAATTCGGACAGTACTACAGCTTGCCCGCTCTCGATGATC CCAGAGTCGAGAAGCTACCCTATTCGATTAGGATCCTTCTGGAATCAGCCATTCGAAACTGTGATGAGTTCCAGGTTAAGAGTAATGATGTGGAGAAGAT CATTGACTGGGAGAACAGTGCTCCTAAACTTGTTGAAATACCATTCAAGCCTGCTAGAGTACTCCTTCAGGATTTCACTGGTGTTCCTGCTGTTGTTGAT CTTGCTTGTATGCGCGATGCCATGAACAAACTGGGAGGCGATTCTAATAAGATTAACCCATTGGTTCCAGTTGATCTCGTCATTGATCATTCAGTTCAGG TGGATGTGGCAAGGTCAGAAAATGCAGTGCAGTCAAATATGGAACTTGAGTTCCAAAGAAACAGAGAACGATTTGCTTTTCTTAAATGGGGTTCAAATGC ATTTGACAACATGCTTGTTGTTCCTCCAGGATCTGGTATCGTACACCAGGTCAACTTGGAGTATCTTGGGAGAGTTGTATTCAACACCAAAGGCTTGCTG TACCCTGATAGCGTTGTGGGAACCGATTCACACACAACTATGATTGATGGTCTTGGTGTTGCTGGCTGGGGAGTTGGTGGAATTGAAGCCGAGGCTGCAA TGCTTGGCCAGCCTATGAGCATGGTCCTCCCTGGTGTTGTCGGCTTCAAGCTGTCAGGAAAGCTGAGAAACGGTGTCACAGCTACTGACTTGGTTCTCAC AGTAACTCAGATGTTACGGAAGCACGGGGTGGTTGGCAAGTTCGTGGAGTTTTATGGTGAGGGAATGAGTGAACTGTCATTAGCCGACCGTGCCACTATT GCAAACATGTCTCCCGAATATGGTGCCACCATGGGCTTCTTTCCTGTGGATCATGTGACACTACAATACCTTAGGCTGACTGGAAGAAGTGATGAGACTG TTTCCATGATAGAATCATACCTGAGGGCAAACAAAATGTTTGTGGACTACAGTGAGCCACAACTGGACAGAGTTTATTCCTCTTATCTAGGGTTACAGCT TGAAGAAGTAGAACCATGTGTATCCGGGCCTAAAAGGCCACATGACCGAGTTCCGATAAAAGAGATGAAATCTGATTGGCATTCATGCTTGGACAGTAGG GTGGGATTTAAGGGTTTTGCTGTGCCAAAGGAAGCACAGACAAAGGTTGCAGAATTTGATTTCCTTGGTACTCGTGCTCAACTTAGACACGGTGATGTCG TCATAGCAGCTATCACAAGTTGCACCAACACCTCGAATCCTAGTGTGATGCTTGGAGCTGCATTGGTTGCGAAGAAAGCTTGTGAGCTAGGATTGGAGGT CAAACCATGGATTAAGACGAGTCTTGCTCCTGGTTCTGGTGTTGTCACTAAGTACCTACAGAAGAGTGGCTTGCAGAAGTACTTGAATCAGCTAGGATTC CATATCGTTGGGTATGGATGCACTACTTGCATTGGAAATTCAGGAGACATTCATGAAGCAGTAGCAGCAGCTATTACAGAAAATGATTTGGTGGCTGCAG CTGTACTGTCCGGTAACAGGAATTTTGAGGGCCGTGTACATCCGTTGACAAGAGCCAATTATTTAGCTTCCCCTCCCCTCGTGGTTGCATACGCCCTTGC TGGAACAGTTGACATCGACTTTGAAACGGAACCACTCGGAGTAGGGAAAGACGGGAAAGATTTATTTTTCAGGGACGTTTGGCCATCCACAGAAGAAGTT GCTGAGGTTGTACAATCAAATGTGCTGCCCGATATGTTTAAGGCTACTTACGAAGCCATTACCAAAGGAAACCCGATGTGGAACGAACTATCAGTGGCTG CAAAGAGTCTCTATGAATGGGAACCAGCATCAACATACATACATGAGCCACCTTACTTTAAGGGCATGACCATGTCTCCTCCCGGACCCCACAGTGTGAA AGATGCTTACTGCTTGCTCAACTTTGGAGATAGCATCACCACTGATCACATCTCCCCTGCTGGTAGCATCCACAAAGACAGCCCGGCAGCTAAGTACCTT ATGGAGCGTGGGGTCGACAGAAGGGACTTCAACTCTTATGGAAGCCGACGTGGTAACGATGAGATAATGGCAAGGGGTACTTTCGCCAACATTCGCATCG TCAACAAATTTCTGGGCGGAGAAGTTGGTCCCAAGACGATCCATATTCCCTCGGGAGAGAAGCTGTCTGTCTTTGATGCTGCTTTGAAGTACAAGAGTGA AGGACAAGACACTATCATTTTGGCTGGCGCGGAGTATGGAAGTGGAAGCTCTCGTGATTGGGCTGCCAAGGGTCCAATGCTTCTGGGTGTAAAAGCCGTA ATTTCAAAGAGCTTCGAGAGAATTCATCGTAGTAATTTGGTTGGGATGGGAATCATCCCGATGTGTTTCAAGACTGGAGAGGATGCCGATACCCTTGGCT TGACCGGTCACGAGCGTTTCACCATTGATTTACCAAGCAGCATCAGTGAAATCAGACCCGGTCAAGATGTGAAGGTGACTACAGATAATGGCAAGTCATT CACCTGCATATTACGCTTCGACACTGAGGTGGAACTCGAGTATTTCAATCACGGAGGCATTCTGCAGTACGTGATCAGAAACTTGATCGGGTCGAACCAA TGA
AA sequence Show only first row Show all	>Lus10028405 pacid=23165978 polypeptide=Lus10028405 locus=Lus10028405.g ID=Lus10028405.BGIv1.0 annot-version=v1.0 MVSENPFNRILKTLEKPDGGEFGQYYSLPALDDPRVEKLPYSIRILLESAIRNCDEFQVKSNDVEKIIDWENSAPKLVEIPFKPARVLLQDFTGVPAVVD LACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQSNMELEFQRNRERFAFLKWGSNAFDNMLVVPPGSGIVHQVNLEYLGRVVFNTKGLL YPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRNGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATI ANMSPEYGATMGFFPVDHVTLQYLRLTGRSDETVSMIESYLRANKMFVDYSEPQLDRVYSSYLGLQLEEVEPCVSGPKRPHDRVPIKEMKSDWHSCLDSR VGFKGFAVPKEAQTKVAEFDFLGTRAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQKSGLQKYLNQLGF HIVGYGCTTCIGNSGDIHEAVAAAITENDLVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFETEPLGVGKDGKDLFFRDVWPSTEEV AEVVQSNVLPDMFKATYEAITKGNPMWNELSVAAKSLYEWEPASTYIHEPPYFKGMTMSPPGPHSVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYL MERGVDRRDFNSYGSRRGNDEIMARGTFANIRIVNKFLGGEVGPKTIHIPSGEKLSVFDAALKYKSEGQDTIILAGAEYGSGSSRDWAAKGPMLLGVKAV ISKSFERIHRSNLVGMGIIPMCFKTGEDADTLGLTGHERFTIDLPSSISEIRPGQDVKVTTDNGKSFTCILRFDTEVELEYFNHGGILQYVIRNLIGSNQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35830		ACO1	aconitase 1 (.1.2)		Lus10028405 [exp]	0	1
AT4G35830		ACO1	aconitase 1 (.1.2)		Lus10041858 [exp]	1.0	0.9114
AT5G07270		XBAT33	XB3 ortholog 3 in Arabidopsis ...		Lus10027441 [exp]	2.8	0.8217
AT5G56240			unknown protein		Lus10008344 [exp]	9.2	0.7859
AT5G53460		GLT1	NADH-dependent glutamate synth...		Lus10000390 [exp]	10.2	0.7589
AT3G16760			Tetratricopeptide repeat (TPR)...		Lus10016826 [exp]	11.4	0.8142
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Lus10043432 [exp]	11.5	0.7921
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030456 [exp]	12.0	0.7562
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10026741 [exp]	12.3	0.8047
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Lus10011325 [exp]	13.1	0.7162
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10034472 [exp]	14.3	0.7558

Compare expression of checked genes

Lus10028405 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.