Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35840 343 / 8e-121 RING/U-box superfamily protein (.1) AT2G17730 335 / 1e-117 NIP2 NEP-interacting protein 2 (.1.2) AT5G66070 325 / 5e-114 RING/U-box superfamily protein (.1.2) AT1G74410 138 / 2e-40 RING/U-box superfamily protein (.1) AT3G20395 110 / 1e-29 RING/U-box superfamily protein (.1) AT5G17600 75 / 2e-15 RING/U-box superfamily protein (.1) AT3G03550 74 / 3e-15 RING/U-box superfamily protein (.1) AT2G17450 72 / 3e-15 RHA3A RING-H2 finger A3A (.1) AT5G05280 71 / 6e-15 RING/U-box superfamily protein (.1) AT1G49200 69 / 3e-14 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041859 [exp] 451 / 1e-163 AT4G35840 371 / 6e-132 RING/U-box superfamily protein (.1) Lus10021524 [exp] 152 / 1e-45 AT3G20395 170 / 7e-53 RING/U-box superfamily protein (.1) Lus10001654 [exp] 127 / 1e-35 AT1G74410 251 / 1e-84 RING/U-box superfamily protein (.1) Lus10021628 [exp] 123 / 3e-34 AT1G74410 250 / 5e-84 RING/U-box superfamily protein (.1) Lus10040073 [exp] 84 / 7e-20 AT3G20395 94 / 5e-24 RING/U-box superfamily protein (.1) Lus10013618 [exp] 77 / 2e-16 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1) Lus10012745 [exp] 75 / 2e-15 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10024405 [exp] 72 / 2e-15 AT4G17905 95 / 9e-24 RING/U-box superfamily protein (.1) Lus10029037 [exp] 71 / 8e-15 AT3G10910 166 / 9e-53 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G108200 [exp] 403 / 2e-144 AT4G35840 369 / 7e-131 RING/U-box superfamily protein (.1) Potri.007G061400 [exp] 367 / 4e-130 AT2G17730 351 / 8e-124 NEP-interacting protein 2 (.1.2) Potri.001G435800 [exp] 150 / 8e-45 AT3G20395 153 / 4e-46 RING/U-box superfamily protein (.1) Potri.005G244800 [exp] 130 / 2e-37 AT4G35840 132 / 3e-38 RING/U-box superfamily protein (.1) Potri.005G244900 [exp] 82 / 2e-19 AT5G66070 79 / 1e-18 RING/U-box superfamily protein (.1.2) Potri.013G073500 [exp] 76 / 4e-16 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.008G054200 [exp] 73 / 9e-16 AT1G20823 80 / 6e-19 RING/U-box superfamily protein (.1) Potri.007G111900 [exp] 74 / 2e-15 AT4G33565 163 / 1e-46 RING/U-box superfamily protein (.1) Potri.013G157000 [exp] 71 / 4e-15 AT3G10910 114 / 1e-32 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 71 / 4e-15 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028406 pacid=23166093 polypeptide=Lus10028406 locus=Lus10028406.g ID=Lus10028406.BGIv1.0 annot-version=v1.0 ATGGAATTCTATCCATACCCACCTCGGTTCTCCGTCTCTTCGTTGCCCTGCTGTCGGAATTTCTTCGAGAAGGTTAAGGAAGTCTGCAACTTTGCTCTTT CTGCCGTCATTGGGAATGTCTTCTCTGCGATCCTCACCTTCTTCTTCGCATTAGTGGGGACCTTGTTGGGAGCCATGACTGGTGCATTGATAGGTCAAGA AACTGAGAGTGGATTCGTTAGAGGTGCTGCTGTTGGTGCCATATCTGGTGCTGTTTTCTCCATTGAAGTCTTTGAATCTTCTCTAGTCCTTTGGCAATCA GATGAATCGGGGATCGGATGCATCTTGTACTTGATTGATGTTATTGCAAGTCTTCTTAGCGGGAGGCTGGTACGCGAACGAATCGGTCCTGCCATGTTAA GTGCTGTGCAAAGTCAGATGGGTGCTGTTGAGACGAGCTTCGAGGATGTTCCGAACATATTCGACACTGGTAGCACCAAAGGACTCCCAGGGGATTCAGT GGAGAAGATACCCAAAATCAAGATCACAAACAAAAACAATGTGGATGCTTCCGGGGATAGAGTTTCTTGTTCAGTTTGCCTCCAGGATTTCCAACTTGGA GAAACAGTTAGAAGTTTGCCACAGTGCCACCACATGTTCCACTTACCTTGCATAGACAAATGGCTCATCCAGCACGCTTCTTGCCCTCTTTGCAGAAGAG ACCTGTAA
AA sequence Show only first row Show all	>Lus10028406 pacid=23166093 polypeptide=Lus10028406 locus=Lus10028406.g ID=Lus10028406.BGIv1.0 annot-version=v1.0 MEFYPYPPRFSVSSLPCCRNFFEKVKEVCNFALSAVIGNVFSAILTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQS DESGIGCILYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVETSFEDVPNIFDTGSTKGLPGDSVEKIPKIKITNKNNVDASGDRVSCSVCLQDFQLG ETVRSLPQCHHMFHLPCIDKWLIQHASCPLCRRDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35840			RING/U-box superfamily protein...		Lus10028406 [exp]	0	1
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Lus10006291 [exp]	3.3	0.8924
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Lus10026033 [exp]	4.2	0.8279
AT3G27820		ATMDAR4	monodehydroascorbate reductase...		Lus10013079 [exp]	8.1	0.8459
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Lus10026634 [exp]	11.5	0.8654
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10026457 [exp]	24.7	0.8139
AT2G43120			RmlC-like cupins superfamily p...		Lus10001159 [exp]	26.7	0.8245
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10012144 [exp]	39.0	0.7609
AT3G26270		CYP71B25	"cytochrome P450, family 71, s...		Lus10028112 [exp]	46.6	0.7656
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Lus10030424 [exp]	47.5	0.7970
AT4G00750			S-adenosyl-L-methionine-depend...		Lus10041366 [exp]	48.2	0.8146

Compare expression of checked genes

Lus10028406 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.