Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54380 255 / 7e-76 THE1 THESEUS1, protein kinase family protein (.1) AT2G28960 252 / 1e-74 Leucine-rich repeat protein kinase family protein (.1) AT3G04690 250 / 4e-74 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT1G30570 248 / 3e-73 HERK2 hercules receptor kinase 2 (.1) AT3G46290 246 / 8e-73 HERK1 hercules receptor kinase 1 (.1) AT5G59700 246 / 1e-72 Protein kinase superfamily protein (.1) AT5G28680 246 / 2e-72 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT1G51880 245 / 7e-72 RHS6 root hair specific 6 (.1) AT1G69790 233 / 7e-72 Protein kinase superfamily protein (.1) AT5G02290 233 / 9e-72 NAK Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041860 [exp] 916 / 0 AT2G14440 262 / 3e-78 Leucine-rich repeat protein kinase family protein (.1) Lus10038595 [exp] 260 / 4e-82 AT5G54380 718 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10021003 [exp] 240 / 2e-73 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10028140 [exp] 246 / 1e-72 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10042844 [exp] 246 / 1e-72 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10003312 [exp] 246 / 2e-72 AT3G46290 741 / 0.0 hercules receptor kinase 1 (.1) Lus10027509 [exp] 244 / 7e-72 AT5G24010 996 / 0.0 Protein kinase superfamily protein (.1) Lus10030308 [exp] 244 / 8e-72 AT3G46290 735 / 0.0 hercules receptor kinase 1 (.1) Lus10037887 [exp] 244 / 1e-71 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G108300 [exp] 494 / 3e-172 AT5G54380 245 / 2e-72 THESEUS1, protein kinase family protein (.1) Potri.001G467000 [exp] 257 / 2e-76 AT1G30570 1090 / 0.0 hercules receptor kinase 2 (.1) Potri.001G405500 [exp] 256 / 4e-76 AT5G54380 1232 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.011G164700 [exp] 255 / 7e-76 AT1G30570 1086 / 0.0 hercules receptor kinase 2 (.1) Potri.017G096400 [exp] 244 / 1e-75 AT3G51550 451 / 6e-151 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.011G128000 [exp] 252 / 8e-75 AT5G54380 1231 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.001G234200 [exp] 252 / 9e-75 AT3G46290 1106 / 0.0 hercules receptor kinase 1 (.1) Potri.009G026600 [exp] 250 / 3e-74 AT3G46290 1093 / 0.0 hercules receptor kinase 1 (.1) Potri.017G143049 [exp] 250 / 4e-74 AT5G24010 1071 / 0.0 Protein kinase superfamily protein (.1) Potri.010G093700 [exp] 235 / 2e-72 AT2G02800 627 / 0.0 protein kinase 2B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10028407 pacid=23165985 polypeptide=Lus10028407 locus=Lus10028407.g ID=Lus10028407.BGIv1.0 annot-version=v1.0 ATGGCTGCTACTGCAGAGGGCATTACTAGCAGTCCCTGCTCATCTCCTATAGTAATCACGAGCTCTTCTCAGAAAAGGACAAATGGGTTCGCCGCGGATC CGCCGTTGGGTTCACATTTCCGGCGGCAGGGCGATTCAAGCAACAAGCACATGAAACTCGTGTGGTTAGGCCTAATTGCAGGGATTGTAGTCGCAATTCT GCTGGTTGTTGTGGTTATGCTTACTTTAGCTTTCAGGAAGAGGATGTCTCGCTGTGGAATTGTCAGGAAAGGAAGCTTGAAGAAACTCAATCTGAAGAGA TTCGAAATGGAGGAGCTGGAGAGGGCAACTGACAATTTCAGTGATGAGCGTTTGTTGGGTTCAGGAGCCTTTGGGAATGTGTACAAAGGTTTCTTTCAAG ATGGAGGGATTACTCTGGCGGTTAAGAAAGCTCATGCTCATTCTTTCCACACTGATGGCGAGTTCATAAATGAAGTGATCTTGCTGTCCAAAGTCAGGCA CAGAAATCTGATCTCATTGGTGGGATTTTGTGAAGAAGCTGGACCAAGAGGAGCCAAGGTACTGGTGTATGAGTATGCACCAAATGGTTCTTTGCTGGAG TATATGATGGGAAGAGGAGGGAAGCAGTTGACTTGGCAGCAAAGAGTTAGTATAGCAATTGGAGCAGCTAGAGGCATAGCTCATTTGCACGACGGGATCC AACCTAGCATAATCCACCGCGACATCAAACCGAGCAACATCCTAGTAGGGGAGAATTTCCAGGCCAAGGTTTCGGATTTCGGGTTGGTGAAGTCGGGGCC AACGGGTGATCAGACACATGTCAGCACTCAGATCAAAGGAACTCCAGGATACCTTGATCCTGCATATTGTTCCAGCTGCCATCTGAGTCAATTCAGTGAC GTTTACAGCTTCGGAGTGATCCTTTTGCAGCTTGTGACTGCTCGGCCTGCAGTTGATGCATCCAGAAGGAACTCTAATTACCATGTTATTGAATGGTCAA GGGCAAGCTTGGAAAGGGGTGATGTTGAAGAGATACTGGATGCTAACCTTATGGTGCAATCTTGCAATATGGATATGATGCTGAAGATGGGACAGCTCGG TCTGAGATGTGTCGAGAAGATTCCGAAAGAACGTCCCACGATGAGTCAGGTGTGGCAGGAGCTGCAAGAAGCTTTGTTCGAAACGACAAGGATCGCTCCA GGGGGGTCTTTGACCACCTCTAATCAATCTATTAGTCAAGTATGCCAAGCGCTGGAAGAAGATTCGTCTGAAACAATCAGGATAACTCAAGAACGATCGT TGACCACGGCAAATCAATCGAGCGAGGAGAAACTGACTGGATCATGTAGAAGCATTGCGAGTGTGAATGGAGTTAGGTTCGAGAGATTTAGCCTGGACAT GGATGCCGGTTCTTCTGTAGGAGCGACAAGCTTAAGGTTCTTTGAGGATACCAGCATAGACATCGATCTTCTTCGGAATAATATAGATAGAACTGTTGAG AACCATAGGTAA
AA sequence Show only first row Show all	>Lus10028407 pacid=23165985 polypeptide=Lus10028407 locus=Lus10028407.g ID=Lus10028407.BGIv1.0 annot-version=v1.0 MAATAEGITSSPCSSPIVITSSSQKRTNGFAADPPLGSHFRRQGDSSNKHMKLVWLGLIAGIVVAILLVVVVMLTLAFRKRMSRCGIVRKGSLKKLNLKR FEMEELERATDNFSDERLLGSGAFGNVYKGFFQDGGITLAVKKAHAHSFHTDGEFINEVILLSKVRHRNLISLVGFCEEAGPRGAKVLVYEYAPNGSLLE YMMGRGGKQLTWQQRVSIAIGAARGIAHLHDGIQPSIIHRDIKPSNILVGENFQAKVSDFGLVKSGPTGDQTHVSTQIKGTPGYLDPAYCSSCHLSQFSD VYSFGVILLQLVTARPAVDASRRNSNYHVIEWSRASLERGDVEEILDANLMVQSCNMDMMLKMGQLGLRCVEKIPKERPTMSQVWQELQEALFETTRIAP GGSLTTSNQSISQVCQALEEDSSETIRITQERSLTTANQSSEEKLTGSCRSIASVNGVRFERFSLDMDAGSSVGATSLRFFEDTSIDIDLLRNNIDRTVE NHR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14510			Leucine-rich repeat protein ki...		Lus10028407 [exp]	0	1
					Lus10033100 [exp]	2.0	0.8226
AT1G11340			S-locus lectin protein kinase ...		Lus10013910 [exp]	16.3	0.8542
AT2G36780			UDP-Glycosyltransferase superf...		Lus10014437 [exp]	18.8	0.7919
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10010572 [exp]	19.9	0.8317
AT4G21970			Protein of unknown function, D...		Lus10021536 [exp]	20.9	0.8369
AT3G23880			F-box and associated interacti...		Lus10036065 [exp]	45.0	0.8106
AT5G66170		STR18	sulfurtransferase 18 (.1.2.3)		Lus10028442 [exp]	72.2	0.7928
AT3G30390			Transmembrane amino acid trans...		Lus10034353 [exp]	77.8	0.7569
AT4G34660			SH3 domain-containing protein ...		Lus10017500 [exp]	93.0	0.7910
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10019729 [exp]	94.4	0.7748

Compare expression of checked genes

Lus10028407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.