Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51370 426 / 2e-150 Protein phosphatase 2C family protein (.1.2) AT5G66080 416 / 2e-145 Protein phosphatase 2C family protein (.1) AT4G38520 389 / 2e-134 Protein phosphatase 2C family protein (.1.2) AT3G12620 353 / 2e-120 Protein phosphatase 2C family protein (.1.2) AT3G55050 326 / 5e-110 Protein phosphatase 2C family protein (.1.2) AT5G02760 308 / 5e-103 Protein phosphatase 2C family protein (.1) AT3G17090 300 / 1e-99 Protein phosphatase 2C family protein (.1.2) AT5G06750 289 / 2e-96 Protein phosphatase 2C family protein (.1.2.3) AT4G33920 288 / 4e-95 Protein phosphatase 2C family protein (.1) AT3G16560 132 / 3e-34 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041861 [exp] 486 / 1e-172 AT3G51370 630 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10027825 [exp] 400 / 5e-139 AT4G38520 586 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10005054 [exp] 400 / 7e-139 AT4G38520 582 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10025076 [exp] 399 / 2e-138 AT4G38520 609 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10024008 [exp] 397 / 2e-137 AT4G38520 605 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10040346 [exp] 358 / 2e-122 AT3G12620 616 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10023470 [exp] 356 / 1e-121 AT3G12620 612 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10030302 [exp] 348 / 1e-118 AT3G12620 597 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10017061 [exp] 318 / 5e-108 AT3G17090 426 / 1e-150 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G108500 [exp] 444 / 3e-156 AT3G51370 646 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.004G177100 [exp] 426 / 5e-149 AT4G38520 608 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.007G061100 [exp] 424 / 3e-148 AT3G51370 590 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.009G137400 [exp] 422 / 2e-147 AT4G38520 657 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G214700 [exp] 360 / 4e-123 AT3G12620 542 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.008G046900 [exp] 355 / 3e-121 AT3G12620 543 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G082800 [exp] 340 / 1e-115 AT3G12620 502 / 4e-179 Protein phosphatase 2C family protein (.1.2) Potri.008G104300 [exp] 306 / 2e-102 AT3G17090 568 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G146700 [exp] 305 / 8e-102 AT3G17090 554 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.006G192600 [exp] 300 / 2e-99 AT5G06750 572 / 0.0 Protein phosphatase 2C family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10028408 pacid=23166100 polypeptide=Lus10028408 locus=Lus10028408.g ID=Lus10028408.BGIv1.0 annot-version=v1.0 ATGAACTTATTGAGGGCCTGCTGGAGCCCGAACTCGGATGGTGGCTTTGGCGGCCACTCGGGTTCGGATTCAGCCGGCCGGCAAGATGGACTCCTTTGGT ACAAAGACTCCGGTCACCACTTGACTGATTTTGCTTCGGAGCAACAGTCGATATCTGTGGACGGGATAAAGAAAGCGTATCAAGCAACGGAAGATGGTTT CCACTCCGTCGTAACTAAACAGTGGCCGATGAAGCCTCAAATCGCAGCCGTTGGATCATGCTGTTTAGTTGGTGTGATATGTGGAGGTACCCTTTATATT GCTAATGTTGGGGATTCCAGAGCGGTGCTTGGCAAAGCTGTCAAGGCAACTGGTGAAGTTCTTGCTATTCAGCTATCATCCGAGCATAATGTCAGCATCG AATCGGTTAGACAAGAGATGCACTCTTTGCACCCGGATGATAAGCATATTGTCGTCTTGAAGCATAATGTATGGCGTGTCAAAGGCCTCATTCAGGTTTC GAGATCGATCGGTGATGTCTATCTGAAGAAGGCCGAGTTCAACAGAGAGCCACTATATGCAAAGTTCCGGCTCCGAGATCCTATAAAGAGACCGATATTA AGTGCTGAGCCTGCTATCACCGAGCATGAACTCGAACCTCATGATCAATTCCTCATCTTTGCATCTGATGGGCTATGGGAGCATCTTAGCAATCAAGATG CAGTTGACATGGTGCAAAACCATCCACGCCATGGTATTGCGAGAAGGCTGGTAAAAGCCGCATTGCTCGAGGCAGCCAAGAAGAGAGAAATGAGGTACTC GGATCTGAAGAAGATCGACCGGGGTGTTCGCAGGCACTTCCACGACGACATCACGGTTGTGGTCGTATTCCTCGACTCGAATCTCGTAAGTAGAGCGGCA AAGCTGGATAAGAGGCCCGACGTTAGCGGTCCGAGGGGGTGGGATTCCCCTGCCTGCAAAGACACTAGCGCCAATGGAACTAAACACCAACTGATGAAGC TCTCTTTTCCCTCTCATTTCTGCACACACCAAACATTACTACAAAACTTGTTCTTAGGAATGCGATGA
AA sequence Show only first row Show all	>Lus10028408 pacid=23166100 polypeptide=Lus10028408 locus=Lus10028408.g ID=Lus10028408.BGIv1.0 annot-version=v1.0 MNLLRACWSPNSDGGFGGHSGSDSAGRQDGLLWYKDSGHHLTDFASEQQSISVDGIKKAYQATEDGFHSVVTKQWPMKPQIAAVGSCCLVGVICGGTLYI ANVGDSRAVLGKAVKATGEVLAIQLSSEHNVSIESVRQEMHSLHPDDKHIVVLKHNVWRVKGLIQVSRSIGDVYLKKAEFNREPLYAKFRLRDPIKRPIL SAEPAITEHELEPHDQFLIFASDGLWEHLSNQDAVDMVQNHPRHGIARRLVKAALLEAAKKREMRYSDLKKIDRGVRRHFHDDITVVVVFLDSNLVSRAA KLDKRPDVSGPRGWDSPACKDTSANGTKHQLMKLSFPSHFCTHQTLLQNLFLGMR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51370			Protein phosphatase 2C family ...		Lus10028408 [exp]	0	1
					Lus10037878 [exp]	3.6	0.8413
AT5G55990		ATCBL2, CBL2	calcineurin B-like protein 2 (...		Lus10039098 [exp]	4.9	0.8056
AT3G25130			unknown protein		Lus10022768 [exp]	4.9	0.8254
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10000913 [exp]	6.6	0.8119
AT2G34585			unknown protein		Lus10038503 [exp]	9.5	0.7917
AT5G06140		ATSNX1	ARABIDOPSIS THALIANA SORTING N...		Lus10021317 [exp]	10.6	0.7816
AT1G71360			Galactose-binding protein (.1)		Lus10002929 [exp]	12.5	0.7951
AT4G31990		AAT3, ATAAT1, A...	ASPARTATE AMINOTRANSFERASE DEF...		Lus10001753 [exp]	13.4	0.7866
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Lus10036540 [exp]	13.4	0.8112
AT5G54540			Uncharacterised conserved prot...		Lus10014803 [exp]	13.4	0.8221

Compare expression of checked genes

Lus10028408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.