Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35870 1097 / 0 early-responsive to dehydration stress protein (ERD4) (.1) AT1G11960 57 / 4e-08 ERD (early-responsive to dehydration stress) family protein (.1) AT3G21620 54 / 3e-07 ERD (early-responsive to dehydration stress) family protein (.1) AT1G62320 54 / 4e-07 ERD (early-responsive to dehydration stress) family protein (.1) AT4G22120 54 / 5e-07 ERD (early-responsive to dehydration stress) family protein AT4G15430 44 / 0.0006 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041862 [exp] 1389 / 0 AT4G35870 1139 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Lus10020032 [exp] 60 / 7e-09 AT4G22120 1186 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10015551 [exp] 60 / 7e-09 AT4G22120 1183 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10000660 [exp] 55 / 3e-07 AT4G02900 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10028000 [exp] 54 / 4e-07 AT4G02900 1116 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10035300 [exp] 49 / 2e-05 AT3G21620 1146 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10030024 [exp] 49 / 2e-05 AT3G21620 1147 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10002996 [exp] 49 / 2e-05 AT4G22120 1087 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10005223 [exp] 44 / 0.0008 AT3G01100 895 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G108600 [exp] 1111 / 0 AT4G35870 1048 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.007G063700 [exp] 1071 / 0 AT4G35870 1089 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.002G226800 [exp] 54 / 6e-07 AT3G21620 1105 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.014G156100 [exp] 53 / 1e-06 AT3G21620 1104 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0416 [flax] [poplar] Anoctamin-like PF02714 [flax] [poplar] RSN1_7TM Calcium-dependent channel, 7TM region, putative phosphate
Representative CDS sequence Show only first row Show all	>Lus10028409 pacid=23166043 polypeptide=Lus10028409 locus=Lus10028409.g ID=Lus10028409.BGIv1.0 annot-version=v1.0 ATGGCTTCGCTTCTATCCCCATTTCTCATCTCCCCTGCCAATCCTCCCACCAACCACTCTTCCTCTCCTCCGCCTTCCTCCAGCGATGGCAGCGGCGATG ACATCGATATCCCCGATGCTTGGTACGGCAACATCCAGTACCTCATCAACATCTCCGCTATCGGCTTGTTCTTCTGCGTCTTCATCTTCCTCTTCGTCAA GCTCCGCAGTGACCACCGCAGCATGCCCGGCCCCACCGCCATCCTCGCCAAGCTCCTCGCTGTCTGGCACGCAACGGGGAGGGAGATCGCTCGACATTGT GGAGCTGATGCAGCGCAGTTCCTTATAATCGAAGGTGGAAGCTTCGGCGTGCTGGTGTCGATAGCTGCTTTATCGATCTGCGTCTTACTCCCGGTGAATC TCTATGCCGGGACGGCGGTGCTCGGCGACCAGTTCTCGAAGACCACGATTAATCATATCGAGAAAGGTTCTGCACTTCTTTGGGTACACTTTTTGTTTGC TGTTGTGGTCGTGGTTTTAGTGCATTTCGGCATGTCCATGATTGAGGAGAGACTTAAAATCACTAGGTTTAGGGATGGGAATGGGAATTTGAGTGATCCC AATGCGAATTCCACTGCGATCTTCACTATTATGGTACAAGGATTGCCCAAGAGTCTAGGTCCTGATAAGACTTTGTTGGAAGAGTACTTTAGATTGAAGT ATCCTGGCAAGGTTTACAAAGTTATTATGCCTATGGATTTGTGTGCGTTGGGTGAGTTAGCCACTGAATTGGTCACCGTTAGGGATGAAATTACTTGGCT GGTTGCCCGAATGGACTCTAGGCTGTTACCTGAAGGATCTGATAATGAAGATGTAGGAGAAGGATTTTGGGAAAAATCTAGAGTGTGGATGATTTCTGTT TGGGGAAAAATGAAGAATTTGTGGGATAGAATGATGGAAGGATTGGGTTATACTGACGAAGATAAGCTAAGAAGATTGCAAGAACTGAGAGCTCAACTAG AAACTGATCTGGCTTCATTTAAGGAAGGTCGTGCACCAGCTGCTGGTGTTGCGTTCATTGTATTAAAGGATGTTTACACGGCTAATAAAGCTCTCCAAGA CCTTAGAAGTGAGAGGAAGAGGAGGTTCGGCAAGTTTTTCTCTGTGACGGAGCTGCGATTGCAAAGAAACCAATGGAAAGTGGAGAGAGCCCCTTTGGCA ACTGATATTTACTGGAACCACCTGGGAACTACAAAGTTGTCCTTGAGGTTAAGGCGGATCTTTGTGAATACGTGCCTATTGTTGATGCTTCTGTTCTTTA GTTCTCCCCTCGCAATTATAACTGCCTTGCAGAGTGCTGGCAGGATCATTAATGCAGAGGCAATGGACAATGCCAAATCGTGGTTGGACTGGGTGCAAAG CTTCAGTTGGTTTGCTTCCCTTGTGTTCCAGTTCTTGCCCAATGTCATGGTATTCGTGAGTATGTACGTAATAGTACCCTCTGCACTTTCTTATCTCTCA AAGTTCGAACAGCATCTTACACTCTCAGGAGAGCAAAGAGCTGCACTTTTGAAGATGGTTTGCTTCTTCCTCGTAAACCTAATCCTATTGAAAGCCTTGG TTGAATCTTCTCTAGAGAGCGCGATTCTGAAAATGGGCAGATGCTATTTGGAGGACGGTGAAGATTGCAAAAGGATTGAGCAATATATGAGTGCGTCGTT CCTATCAAGATCCTGTCTTTCTTCATTGGCATTTCTAATCACAAGCACTTTCCTCGGGATATCGTTCGATCTATTAGCTCCAATGCCTTGGATAAAGAGG AAAATACAGATGTTCCGGAAGAACGACATGCTTCAGCTCGTACCAGAGCGAAGCGAAGACTACCCATTGGAAAATCAGACCGTGGTGGATAGCCTCCAGA GACCGCTGATGCCGAATTATGTATTCGACTCTCCCACACTCAACCGAAACAATTCAGACGGGCAAGATCTTTCCGAATATCCAATCAGCAGCTTTAGCAG GACATCTCCCATTCCGAAGCAGAAGTTCGATTTCGCCCAGTACTATGCATTCAACTTGACGATCTTCGCCCTCACGTTGATATACTCTTCTTTCGCTCCG CTGGTGGTCCCGGTGGGTGCCATCTATTTCGGATATCGGTACATGGTAGACAAGTACAACTTCCTGTTCGTGTACAGAGTCCGGGGTTTTCCTGCTGGGA ACGATGGAAGGTTGATGGATGTCGTGCTGGGGGTGATGAGGTTCTGCGTCGATCTATATCTTGTATCGATGCTGTTGTTCTTTGCGGTACAAGGCGATTC GACAAAGCTGCAAGCCATCTTCACACTGGGGTTGCTAGTAGCGTACAAACTTTTGCCTTCGGATAGAGACTATTTCCACCCTGCACTTTTACAAGGCTTT CAAACTGTTGATAGCGTTGTAGACGATGGACCCGTTGATTACGAGGTTTTCTCGCAACCCACGTTCGACTGGGATATGTACAGTCCTTGA
AA sequence Show only first row Show all	>Lus10028409 pacid=23166043 polypeptide=Lus10028409 locus=Lus10028409.g ID=Lus10028409.BGIv1.0 annot-version=v1.0 MASLLSPFLISPANPPTNHSSSPPPSSSDGSGDDIDIPDAWYGNIQYLINISAIGLFFCVFIFLFVKLRSDHRSMPGPTAILAKLLAVWHATGREIARHC GADAAQFLIIEGGSFGVLVSIAALSICVLLPVNLYAGTAVLGDQFSKTTINHIEKGSALLWVHFLFAVVVVVLVHFGMSMIEERLKITRFRDGNGNLSDP NANSTAIFTIMVQGLPKSLGPDKTLLEEYFRLKYPGKVYKVIMPMDLCALGELATELVTVRDEITWLVARMDSRLLPEGSDNEDVGEGFWEKSRVWMISV WGKMKNLWDRMMEGLGYTDEDKLRRLQELRAQLETDLASFKEGRAPAAGVAFIVLKDVYTANKALQDLRSERKRRFGKFFSVTELRLQRNQWKVERAPLA TDIYWNHLGTTKLSLRLRRIFVNTCLLLMLLFFSSPLAIITALQSAGRIINAEAMDNAKSWLDWVQSFSWFASLVFQFLPNVMVFVSMYVIVPSALSYLS KFEQHLTLSGEQRAALLKMVCFFLVNLILLKALVESSLESAILKMGRCYLEDGEDCKRIEQYMSASFLSRSCLSSLAFLITSTFLGISFDLLAPMPWIKR KIQMFRKNDMLQLVPERSEDYPLENQTVVDSLQRPLMPNYVFDSPTLNRNNSDGQDLSEYPISSFSRTSPIPKQKFDFAQYYAFNLTIFALTLIYSSFAP LVVPVGAIYFGYRYMVDKYNFLFVYRVRGFPAGNDGRLMDVVLGVMRFCVDLYLVSMLLFFAVQGDSTKLQAIFTLGLLVAYKLLPSDRDYFHPALLQGF QTVDSVVDDGPVDYEVFSQPTFDWDMYSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35870			early-responsive to dehydratio...		Lus10028409 [exp]	0	1
AT1G23780			F-box family protein (.1)		Lus10012441 [exp]	1.0	0.8962
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10039105 [exp]	1.4	0.8892
AT4G28980		CAK1AT, CDKF;1	CYCLIN-DEPENDENT KINASE F;1, C...		Lus10023659 [exp]	4.2	0.8486
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031201 [exp]	5.7	0.8778
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10009539 [exp]	5.9	0.8717
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10015696 [exp]	8.0	0.8719
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10013467 [exp]	8.1	0.8405
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10007931 [exp]	8.5	0.8534
AT4G00650		FLA, FRI	FLOWERING LOCUS A, FRIGIDA-lik...		Lus10043012 [exp]	8.9	0.7587
AT3G12915			Ribosomal protein S5/Elongatio...		Lus10031779 [exp]	11.2	0.8540

Compare expression of checked genes

Lus10028409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.