Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35880 665 / 0 Eukaryotic aspartyl protease family protein (.1) AT2G17760 460 / 8e-157 Eukaryotic aspartyl protease family protein (.1) AT3G51330 381 / 5e-126 Eukaryotic aspartyl protease family protein (.1) AT3G51360 364 / 6e-120 Eukaryotic aspartyl protease family protein (.1) AT3G51350 363 / 5e-119 Eukaryotic aspartyl protease family protein (.1) AT3G51340 338 / 2e-109 Eukaryotic aspartyl protease family protein (.1) AT5G10080 287 / 1e-89 Eukaryotic aspartyl protease family protein (.1) AT1G65240 134 / 1e-33 Eukaryotic aspartyl protease family protein (.1) AT1G05840 132 / 7e-33 Eukaryotic aspartyl protease family protein (.1) AT1G49050 130 / 1e-32 Eukaryotic aspartyl protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041864 [exp] 879 / 0 AT4G35880 646 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10028411 [exp] 466 / 3e-159 AT2G17760 527 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041865 [exp] 429 / 1e-144 AT2G17760 523 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10019678 [exp] 318 / 2e-101 AT5G10080 567 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10016434 [exp] 294 / 5e-93 AT5G10080 515 / 1e-180 Eukaryotic aspartyl protease family protein (.1) Lus10042982 [exp] 136 / 8e-34 AT1G49050 569 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10005356 [exp] 129 / 1e-31 AT5G22850 669 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021397 [exp] 128 / 2e-31 AT5G22850 677 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021485 [exp] 124 / 5e-30 AT1G05840 723 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G063800 [exp] 732 / 0 AT4G35880 696 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G108700 [exp] 429 / 7e-145 AT2G17760 515 / 1e-179 Eukaryotic aspartyl protease family protein (.1) Potri.005G079900 [exp] 343 / 3e-111 AT5G10080 538 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G092100 [exp] 293 / 8e-92 AT5G10080 474 / 3e-163 Eukaryotic aspartyl protease family protein (.1) Potri.009G001700 [exp] 140 / 2e-35 AT5G22850 711 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G213600 [exp] 135 / 7e-34 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.019G054900 [exp] 129 / 4e-32 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G146400 [exp] 129 / 5e-32 AT1G05840 758 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G118800 [exp] 128 / 2e-31 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.016G096700 [exp] 120 / 1e-28 AT2G36670 578 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10028410 pacid=23166122 polypeptide=Lus10028410 locus=Lus10028410.g ID=Lus10028410.BGIv1.0 annot-version=v1.0 ATGTCAGCTTTTGATGGCGCCAAAGTTTTCAGTTGTTGGACTAGCCGTTTGACGCGATGTCAGATCATTTCCTCAATCCCCATTCATCAAGCTTCAAACA AATTCCAACGCCTTCTTCTTCTTCCTCCTAATCCCCCCCCAATTTCACAACCCAAATGCAATTCCCATCAGGGATCCAACAGGCGTCCCGTTGAAAAGAT GCCGTCTTTCTTGAAATCGCCTCTCTTCTTCCTCGCTTCTTGCCTCGCCTTACTCAGTAGCAGCAGTCTCGCTTCTTCTTATTCTTCCAATGGCGGCCGC ATCTTCACCTTCGAGATGCACCACCGCTACTCCGACACCTACAAGAACTGGTACACTCGCGGTGCCCCCCACTTCCCTCCTCACAACTACTGGCCCAAAG AAGGAACCTTCGAGTACTACGCCGCTCTCGCCCGCCGCGACCACTTCCTCCGCGGCCGCCGCCTCTCCGACGAGTTCCCCCTCGCTTTCTCCGACGGCAA CTCCACCTTCCGGATTAGCTCCCTGGGATTCTTGCATTATACGACGGTGGAATTGGGGACGCCGGGAGTGAAATTCATGGTGGCTCTTGACACAGGGAGT GACTTGTTCTGGGTTCCTTGTCAATGTAGCAGCTGTGCTCCTACTGAGGGATCTGCTTATTATGCTTCTCAGGATTTTGAACTAAACATGTACAATCCCA GTGAATCATCTACGAGCAAAAGGGTCACTTGCGACGATGACCTATGTATACACCGCAATCGTTGCTTCCGAACTTTAAGCAGCTGCCCTTACGCAGTATC CTACGTTTCTGCTCAAACGTCTACTTCAGGGATCTTGGTTCAGGATCTTCTGCATCTAACAACTGAAGGCGGTTATTCGGATGTTGTCGAGGCGCCAGTG ACATTCGGATGTGGACAGGTACAGAGCGGTTCGTTTCTTGACATTGCAGCTCCGAACGGTTTGTTCGGGCTTGGGATGGAGAAGATATCAGTTCCCAGTA CTTTGGCAAGGGAAGGTTTGATATCAGATTCTTTTTCAATGTGCTTTGGGCGTGATGGCGTTGGAAGGATCAGTTTCGGGGATAAGGGTAGTCCCGACCA GGACGAAACTCCGTTTAATCTCAACCCATCACACCCAACATATAATATCACAGTGAGTCGTGTTAGAGTAGGGACGACCACAATTGATGCAGAAGATATT ACAGCTCTTTTCGATTCCGGGACCTCTTTTACTTACTTGGTCAACCCAATCTACTCAAGAATCTCTGAGAGTTTCCATTCACAAGCAAGGGATAGCAGGC GTGCACCGGATTCTAGAATCCCATTTGAGTATTGCTACAATATGAGTCCTGATGCAAGTGCTAGCTTGATACCAAGTTTGACTCTGACCATGAAAGGAGG CAGCCATTATACCGTATTTGACCCGATCATAGTAATCTCCACTCAGGGCGAGCTTGTATACTGTCTGGCTATTGTAAAGAGTGCAGAGCTCAATATAATT GGACAGAACTTCATGACAGGTTACCGTATAGTGTTCGATAGAGAAAGGCTCGTTCTTGGTTGGAAGAAGTTCGATTGCTATGATGTTGAGGAATACACAA ATGTGCCGGTAGAGCCGCGCACATCCATGGGCGGTGACGTCAACTTGACCGGTGCAGAAGAAATGGAAACTGATAACCCTGATACTTCAGCTGCATCATC ATATTCATCACAAATGTATGTTATAGAATCACTCGCACAGAAAGTGAGTTTGCTTTTCTTGCTGTTGACTTTGTTGGATTTTGTTGACTGTTTCTACCAC AGCTTGATGTAA
AA sequence Show only first row Show all	>Lus10028410 pacid=23166122 polypeptide=Lus10028410 locus=Lus10028410.g ID=Lus10028410.BGIv1.0 annot-version=v1.0 MSAFDGAKVFSCWTSRLTRCQIISSIPIHQASNKFQRLLLLPPNPPPISQPKCNSHQGSNRRPVEKMPSFLKSPLFFLASCLALLSSSSLASSYSSNGGR IFTFEMHHRYSDTYKNWYTRGAPHFPPHNYWPKEGTFEYYAALARRDHFLRGRRLSDEFPLAFSDGNSTFRISSLGFLHYTTVELGTPGVKFMVALDTGS DLFWVPCQCSSCAPTEGSAYYASQDFELNMYNPSESSTSKRVTCDDDLCIHRNRCFRTLSSCPYAVSYVSAQTSTSGILVQDLLHLTTEGGYSDVVEAPV TFGCGQVQSGSFLDIAAPNGLFGLGMEKISVPSTLAREGLISDSFSMCFGRDGVGRISFGDKGSPDQDETPFNLNPSHPTYNITVSRVRVGTTTIDAEDI TALFDSGTSFTYLVNPIYSRISESFHSQARDSRRAPDSRIPFEYCYNMSPDASASLIPSLTLTMKGGSHYTVFDPIIVISTQGELVYCLAIVKSAELNII GQNFMTGYRIVFDRERLVLGWKKFDCYDVEEYTNVPVEPRTSMGGDVNLTGAEEMETDNPDTSAASSYSSQMYVIESLAQKVSLLFLLLTLLDFVDCFYH SLM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35880			Eukaryotic aspartyl protease f...		Lus10028410 [exp]	0	1
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10023877 [exp]	4.2	0.9159
AT5G03670			unknown protein		Lus10035565 [exp]	10.5	0.8906
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10008269 [exp]	10.8	0.8912
AT3G46320			Histone superfamily protein (....		Lus10019956 [exp]	12.2	0.8931
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10041735 [exp]	14.1	0.8942
AT5G52220			unknown protein		Lus10038870 [exp]	15.0	0.8755
AT4G22860			Cell cycle regulated microtubu...		Lus10007022 [exp]	15.1	0.8777
AT2G32940		AGO6	ARGONAUTE 6, Argonaute family ...		Lus10035331 [exp]	16.5	0.8812
AT1G78650		POLD3	DNA-directed DNA polymerases (...		Lus10013748 [exp]	19.6	0.8523
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10002326 [exp]	22.2	0.8752

Compare expression of checked genes

Lus10028410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.