Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17760 498 / 4e-173 Eukaryotic aspartyl protease family protein (.1) AT4G35880 431 / 2e-146 Eukaryotic aspartyl protease family protein (.1) AT3G51330 376 / 4e-125 Eukaryotic aspartyl protease family protein (.1) AT3G51350 367 / 2e-121 Eukaryotic aspartyl protease family protein (.1) AT3G51360 359 / 5e-119 Eukaryotic aspartyl protease family protein (.1) AT3G51340 335 / 3e-109 Eukaryotic aspartyl protease family protein (.1) AT5G10080 273 / 2e-85 Eukaryotic aspartyl protease family protein (.1) AT5G22850 123 / 4e-30 Eukaryotic aspartyl protease family protein (.1) AT4G33490 121 / 6e-30 Eukaryotic aspartyl protease family protein (.1.2) AT3G02740 122 / 1e-29 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041865 [exp] 897 / 0 AT2G17760 523 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10028410 [exp] 438 / 3e-148 AT4G35880 672 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041864 [exp] 421 / 4e-143 AT4G35880 646 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10019678 [exp] 271 / 2e-84 AT5G10080 567 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10016434 [exp] 251 / 2e-77 AT5G10080 515 / 1e-180 Eukaryotic aspartyl protease family protein (.1) Lus10042982 [exp] 132 / 1e-32 AT1G49050 569 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10025687 [exp] 124 / 9e-31 AT1G77480 463 / 5e-162 Eukaryotic aspartyl protease family protein (.1.2) Lus10005356 [exp] 121 / 3e-29 AT5G22850 669 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10018146 [exp] 119 / 5e-29 AT1G77480 460 / 1e-160 Eukaryotic aspartyl protease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G108700 [exp] 543 / 0 AT2G17760 515 / 1e-179 Eukaryotic aspartyl protease family protein (.1) Potri.007G063800 [exp] 449 / 9e-154 AT4G35880 696 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G079900 [exp] 287 / 1e-90 AT5G10080 538 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G092100 [exp] 256 / 1e-78 AT5G10080 474 / 3e-163 Eukaryotic aspartyl protease family protein (.1) Potri.001G213600 [exp] 123 / 4e-30 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.009G001700 [exp] 121 / 2e-29 AT5G22850 711 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G118800 [exp] 115 / 2e-27 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.002G081400 [exp] 114 / 5e-27 AT1G44130 449 / 1e-156 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 111 / 3e-26 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.016G096700 [exp] 110 / 9e-26 AT2G36670 578 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10028411 pacid=23165962 polypeptide=Lus10028411 locus=Lus10028411.g ID=Lus10028411.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCTCCTGGATATTCTGCTCTACTGGCGGGGATCTTGGTTCTACTGTTGGGCGACTCCCCTTGCTGGGGTTTCGGAACAATTGGGTTTGATT TCCACCACCGCTACTCCGATCAGCTCAAAGGGATGTTGGCCGTCGACGAGCTACCAGAGAAAGGAACTCCGCACTACTATGCTGCCATGGCCCACCGTGA CCATGTTAATTGGAGGACTAAACTCCACGGCCGTGGCTTGCTCGATGATGATCAGACCACCCTGACTCCTCTCACGTTCGGCGACGGCAACGAGACTTAC CGCCTCAATTCCTTGGGATACTTACATTATGCCAATGTTTCGGTGGGGACACCAAGCGTATCGTTTCTGGTAGCATTAGACACTGGAAGCGATCTCTTCT GGTTACCCTGTGATTGCAAGAGCTGCGTTCGTGGCTTGCAGACTTCTTCTGGCCAGAAAATAGACTTCAATATCTACAGTCCAAACGCATCATCCACAAG CGAAAGCGTCACTTGCAGCAACAGCTTGTGTGCCTCACAAGGGCAGTGCCCTTCCCCGCAGATCGATTGCAAGTATAAGGTTGAATACCTCGACAATGGT ACTTCATCGACTGGAGTCCTGGTTGAGGATGTATTGCACTTGGCACCTGATTCCACTAAGTCTAAGCCTCTTGAAGCCAAGATCACTTTCGGTTGTGGTC AGGTGGAGACAGGTTCGTTCCTAGACGGGGCAGCTCCCAACGGTTTGTTTGGGCTCGGGATGTCCAATGTGTCGGTTCCCAGTACTTTAGCTAGAGAAGG ATACACTTCCAATTCATTCTCCATGTGTTTTGGAGAAGATGGGTTGGGAAGAATCAGCTTTGGAGATACAGGAAGTTCAAACCAAGGCGAAACGCCTTTT AATCTGAGAAAATTGCACCCGACTTACAACATCAGTATCGGTCAGATAGTTGTGGGAGGAAACGCTGAGGACGTTGAGTTGTCAGCAATTTTCGATACGG GAACCTCGTTCACTTACTTGAATGATCCTGCTTATTCTGTTATAACCAAGAATTTTGATAGTTTGGTTAAAGATCCGCGCCATTCTTCATCGTCAACTAA AGTCCCTTTCGAGTACTGCTACGAAATAAGCTCGAACCAGACAGAGGTGCCTACACTAGATCTGATGATGAAAGGCGGAGAATACTTCAACGTCACTAAC CCTCTAGTATTCGTTAATCTTCAGAATGGCGGTCTTCTGTACTGTCTAGGACTGGTTAAGAGCGGCAATGTGAACATTATCGGACAGAACTTCATGACCG GTTATAAAATCGTATTTGACCGAGAAAGGAATGTGCTTGGTTGGAGAACATCAGATTGTTACGCCAACCGCAACTCCAACAGCTTACCGATTGGCCCAAC AAGCTCTCATGCTATCCCGCCAGTTACAGCCATGAACCCGGAGGCCACAGATGCCGGGAGGAGCAATACCAGTGTTTCATCAGGATATCGTTCAACACTG CAACTAACATCATTCAGTTTTGGAGTCGTCATTGCTCTTGCGGTCTTCTTTTTGGTTTGA
AA sequence Show only first row Show all	>Lus10028411 pacid=23165962 polypeptide=Lus10028411 locus=Lus10028411.g ID=Lus10028411.BGIv1.0 annot-version=v1.0 MASSPGYSALLAGILVLLLGDSPCWGFGTIGFDFHHRYSDQLKGMLAVDELPEKGTPHYYAAMAHRDHVNWRTKLHGRGLLDDDQTTLTPLTFGDGNETY RLNSLGYLHYANVSVGTPSVSFLVALDTGSDLFWLPCDCKSCVRGLQTSSGQKIDFNIYSPNASSTSESVTCSNSLCASQGQCPSPQIDCKYKVEYLDNG TSSTGVLVEDVLHLAPDSTKSKPLEAKITFGCGQVETGSFLDGAAPNGLFGLGMSNVSVPSTLAREGYTSNSFSMCFGEDGLGRISFGDTGSSNQGETPF NLRKLHPTYNISIGQIVVGGNAEDVELSAIFDTGTSFTYLNDPAYSVITKNFDSLVKDPRHSSSSTKVPFEYCYEISSNQTEVPTLDLMMKGGEYFNVTN PLVFVNLQNGGLLYCLGLVKSGNVNIIGQNFMTGYKIVFDRERNVLGWRTSDCYANRNSNSLPIGPTSSHAIPPVTAMNPEATDAGRSNTSVSSGYRSTL QLTSFSFGVVIALAVFFLV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17760			Eukaryotic aspartyl protease f...		Lus10028411 [exp]	0	1
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Lus10011246 [exp]	1.0	0.9245
AT4G34860		A/N-InvB	alkaline/neutral invertase B, ...		Lus10034525 [exp]	2.0	0.8830
AT1G20110			RING/FYVE/PHD zinc finger supe...		Lus10013571 [exp]	4.9	0.8759
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10025136 [exp]	6.3	0.8755
AT4G19110			Protein kinase superfamily pro...		Lus10038123 [exp]	7.0	0.8617
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10015400 [exp]	7.7	0.8551
AT1G18890		CPK10, ATCDPK1,...	calcium-dependent protein kina...		Lus10036667 [exp]	7.9	0.8338
AT1G53050			Protein kinase superfamily pro...		Lus10039836 [exp]	8.9	0.8302
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Lus10011010 [exp]	11.2	0.8375
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Lus10023789 [exp]	13.2	0.8626

Compare expression of checked genes

Lus10028411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.