Plant FIBer expression Database

Lus10028412 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G01160 377 / 3e-120 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041866
[exp]
1049 / 0 AT3G01160 504 / 2e-169 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G108800
[exp]
408 / 3e-132 AT3G01160 334 / 3e-104 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08159 NUC153 NUC153 domain
Representative CDS sequence
>Lus10028412 pacid=23166055 polypeptide=Lus10028412 locus=Lus10028412.g ID=Lus10028412.BGIv1.0 annot-version=v1.0
ATGGATACCGCCGCCGGCAAGAAGCAGAAGAAGATGAAAAGTGGAGTAAGAAAGCAACGATCCGAAGGTTCCAACAGCGATGGGAAAGCTGGAATCGGCG
GCAGCGCCGATATGGTATCTGATCCTCGGTTTGCTTTCGCACACACCGACCCTCGGTTCCAGAAAGTTCCGAAGAAAACAACTAAGGTCACCATCGATTC
TCGATTCAGCAGGGTGTTCAAGGATAAGGACTTCGTTGGATCTTCCGCTCCTTTAGACAAGCGCGGCAGGCGGAAGAAGCAGGACTCGTCGAGTGCTCTC
CGCCATTATTATCAAATGGAGGAAGGTGACGGAAGGAAGAAGAACGGGAAAGCCGAACAGAAGGAAGAAGACACTGGAAGTGAAGATGAACAAGTGATTA
TTGAGAAGGAGCAATTGAGGAAAAAGCCTGCTCTCGCTGCTGCAGAAAGTGAGTCTAATGGCGAAGCTGAGTCTTCGGATTCGGATGATGAGAATCAAGA
AGAAGTTGAAGATGATGATACCACTACAGATGAAGAAGATGGAGCCGGGTTGGTCTTTGAGGACGATGTGCCTCAAGTTGAGGTGGAGAACATACCAGTT
GTTGAAGACGGAACCAAAAGGCTGGCTGTTGTCAATATGGACTGGAGGCATGTTAGGGCTGTCGATTTATTGGTAGTGCTAAGATCATTTCTCGAAAATG
GTGGAATTATCTCGTCTGTAGCTGTATATCCTACGGAATTCGGTCTTCAGCGCATGAAAGAAGAAGTTAATGGTCCTGTTGGCTTATTTGACGACGAGGA
TAAAGATAAAGATGAAGATGAAGACGATAACAGTGATGATGAAATAGATGAGGAGAAGTTACGTTCCTATGAAAAAAGTAGGCTCAGGTATTACTTTGCT
GTGGTGGAATGTGATTCAGTTGCAACAGCAGAGCAAATTTACAAGGAGTGTGACGGAGTTGAGTTTGAGAGATCTTCCAATGTTCTTGATTTGAGATTCA
TTCCTGATTCCATGGAATTTAAGCATCCACCTCGAGACATTGCCACGGAGACACCTGGAAGTTATGATGGGATCGACTTCCACACTAAAGCTTTGCAGCA
CAGCAACATACCTATTTCTTGGGATGAAGATGAACCTCAGCGTGTGAAGACCTTGAACAGAAAATTTAATAAGGATCAGTTAGCTGAAACGGACTTCCGG
GAGTATTTAGCCTCTGATGAGGGTGAAAGTGATAGTACTGAGAATGACGATGATACCAAAAAGGCTAAGTACCATGTTCTGATGCAGTCGGCTGATGGTT
CAGACCCTGAAGAGGAGGATGACAAAGCCCAGGAGATGGAGGTTACTTTCAACACAGACTTGGAGAACTTGAGCAAACGTTTACTGGAAAAGAAGGATAA
GAAATCCGAGACTGTTTGGGAAGAGTATCTAAGGAAAAAGAAGGAAAAAAAGGCAGCTCGAAAACAAAAATCCAAGTCCAAGCATTCATCATCAGACGAT
GAAAGTGATTCAGATGTTGATGATAACGTAGATTTTCAAGATGCAGATGACTTCTTTGTTGAGGATCCACCAGCAGATAAAGGTGGTAAAAAAAAGAAAG
GTGCTCGGGGTAAAGGTGAGAAAGGAAAGTCACAACATACTCAAGAAGAGAAGAAACAATCTGAAGCAACGACCGCGGAGCTTGAGTTATTACTTGCTGA
TGATCAACGGGCTGACGATGCCCCCAAAGGATATAACATGAAACCAAAGAAGGTGAAGGGTAAAAGGGGCAAAGAAGTAGGAGACGAGAGCAAGATACCC
ACCGCCGATTATGACGACCCTCGCTTTTCAGCTCTCTTCAATTCGCCTCTCTTCGCATTAGATCCAACGGATCCGCAGTTCAAAAGGAGTGCCGCCTACG
CTAGGCAGACAGCACAAAAACAGCACAAGGGCGATCGAGAGCAATCACGCAAGCCAAAACACGAAACAGTAGTGCAGACGGAACCTACTGCCCTGGAGAC
GACTAGTGAACAACCACCCATCTCTGATGATCAACCACGCCAGAATTCGAAGCACGGGCTATCTTCTTTGGTCAAGTCCATTAAGATGAAGTCGAAACAA
CTTCAGCAGCCTTCTAATAGCAAGGCATCTACAAAAGAACAGAAGAAATCAAAACGTTCAGCTGAAACTGGGGACCTGGTAGAGTCAGTAAAGAAGAAAG
CCAAAGGTCGATGA
AA sequence
>Lus10028412 pacid=23166055 polypeptide=Lus10028412 locus=Lus10028412.g ID=Lus10028412.BGIv1.0 annot-version=v1.0
MDTAAGKKQKKMKSGVRKQRSEGSNSDGKAGIGGSADMVSDPRFAFAHTDPRFQKVPKKTTKVTIDSRFSRVFKDKDFVGSSAPLDKRGRRKKQDSSSAL
RHYYQMEEGDGRKKNGKAEQKEEDTGSEDEQVIIEKEQLRKKPALAAAESESNGEAESSDSDDENQEEVEDDDTTTDEEDGAGLVFEDDVPQVEVENIPV
VEDGTKRLAVVNMDWRHVRAVDLLVVLRSFLENGGIISSVAVYPTEFGLQRMKEEVNGPVGLFDDEDKDKDEDEDDNSDDEIDEEKLRSYEKSRLRYYFA
VVECDSVATAEQIYKECDGVEFERSSNVLDLRFIPDSMEFKHPPRDIATETPGSYDGIDFHTKALQHSNIPISWDEDEPQRVKTLNRKFNKDQLAETDFR
EYLASDEGESDSTENDDDTKKAKYHVLMQSADGSDPEEEDDKAQEMEVTFNTDLENLSKRLLEKKDKKSETVWEEYLRKKKEKKAARKQKSKSKHSSSDD
ESDSDVDDNVDFQDADDFFVEDPPADKGGKKKKGARGKGEKGKSQHTQEEKKQSEATTAELELLLADDQRADDAPKGYNMKPKKVKGKRGKEVGDESKIP
TADYDDPRFSALFNSPLFALDPTDPQFKRSAAYARQTAQKQHKGDREQSRKPKHETVVQTEPTALETTSEQPPISDDQPRQNSKHGLSSLVKSIKMKSKQ
LQQPSNSKASTKEQKKSKRSAETGDLVESVKKKAKGR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G01160 unknown protein Lus10028412
[exp]
0 1
AT1G73100 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)... Lus10008681
[exp]
9.3 0.8267
AT3G12640 RNA binding (RRM/RBD/RNP motif... Lus10015696
[exp]
9.9 0.8265
AT3G15120 P-loop containing nucleoside t... Lus10013677
[exp]
10.8 0.8113
AT1G08410 P-loop containing nucleoside t... Lus10013359
[exp]
18.3 0.7328
AT3G16840 P-loop containing nucleoside t... Lus10004404
[exp]
19.2 0.7652
AT5G37830 OXP1 oxoprolinase 1 (.1) Lus10025331
[exp]
20.0 0.7812
AT1G79930 AtHsp70-14, HSP... heat shock protein 91 (.1.2) Lus10011461
[exp]
24.2 0.7374
AT3G01160 unknown protein Lus10041866
[exp]
28.9 0.7574
AT3G16620 ATTOC120 ARABIDOPSIS THALIANA TRANSLOCO... Lus10005063
[exp]
32.5 0.7629
AT5G56680 SYNC1ARATH, SYN... EMBRYO DEFECTIVE 2755, Class I... Lus10032704
[exp]
34.6 0.7762

Lus10028412 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.