Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25580 438 / 4e-146 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G32450 419 / 9e-140 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G29710 338 / 5e-109 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G34370 329 / 7e-106 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G15690 290 / 3e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 280 / 2e-85 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 282 / 2e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 271 / 8e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G49142 269 / 2e-80 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 267 / 2e-80 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041867 [exp] 1196 / 0 AT2G25580 447 / 2e-149 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014049 [exp] 317 / 1e-99 AT2G15690 478 / 2e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019864 [exp] 312 / 7e-98 AT2G15690 477 / 3e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032688 [exp] 294 / 7e-92 AT2G15690 375 / 2e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008570 [exp] 288 / 9e-90 AT2G15690 375 / 9e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 284 / 2e-86 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 278 / 6e-84 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035788 [exp] 277 / 1e-82 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10040577 [exp] 266 / 1e-82 AT1G25360 577 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G116600 [exp] 553 / 0 AT2G25580 452 / 3e-151 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G058300 [exp] 330 / 1e-103 AT2G15690 499 / 2e-170 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G252400 [exp] 281 / 2e-87 AT4G21065 496 / 8e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G369900 [exp] 285 / 3e-87 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 291 / 4e-87 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G038900 [exp] 278 / 1e-86 AT2G15690 280 / 1e-88 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 283 / 3e-85 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G048800 [exp] 281 / 2e-84 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G129100 [exp] 285 / 2e-83 AT5G09950 1287 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G077700 [exp] 275 / 2e-83 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10028413 pacid=23165965 polypeptide=Lus10028413 locus=Lus10028413.g ID=Lus10028413.BGIv1.0 annot-version=v1.0 ATGTCGAAGAAGGGAGTTTGCCTTCTTGCTGTCAAGTCGCTGAGCACTTCTCCCAAGCTGCGCTTTACTGGTGAGCCTTCTTGTCCAATCAAACCAACTT TCTTCTCCAGAAACCTAAACACAGCTCAAAGCTTAGAGCTTCAACGCGAAGATTTTAGTGGTTGCCCTCCCGGAGAGAACCAAACCCCTTTAGGGCCATG GAATAACTCAAAAGCTGCAATCGGCTTAAACCCTAATCAAGGTTTTGGGGGCAGCCCTGGAAACCCATGGAGTAATCAGGATAGGCAGAACGGTTACTTA GGTCATATGGAAAACCGTACCAGTGTTCATCAGAACAGTGCTATTGAGAAAAATGGATACTTTGATGGGAATTCTGGATATAGGAATGATCAGTTTCAGT TACAACAGAACATACAAGGCAATGTGCCGAATTTGTGGGGTTCACGAAGTCATTCTCAACAGAACGTGCACGCCAGTGATATGCCGAATTCATGGAGTCC TGGACGTAATTCAGATGGAGTCTACAGAAGAAATGATAATTTACAAGGCTCTTTACCTTCCCAAGGAGGCTTCGATAATTACTCTTCCTATAATGGTCAA CATACGCAGTATGGGATAGATGATCGTCATGCTGGTGGTAGTGGGACGATGCCAAATCGTCCACTGACTATGCGAGACCAGCAGAATCATAACGTTGGAG AATACCAACAAGGCGTTGTCGGGATACAAGGTGGGGCAGTAGCTTCTCCTCAACAATCAAACAACAATAATGGAGTTGGAGCTGGGGGTTTCGGGGGTAC AGTGGATGGAGATCCCATGGAGGAGATGAATAGGTTTTGCAACGAGGGCAAAGCTAAGGAAGCGGTGGAAATGTTGCAGAAGTTACAAGGAATGCAAGTA ACTGTGGATTTAGATCGTGTCTTGAAGTTAGTTCATGTTTGTGGAGACTGTATGGCTTTAGCAGAGGCAAAGCTTGTTCATGAACATATTAAGCGTGCAA TCCCATCACTTGATATCAACACTTATAACAAAATCCTGGAAATGTACTCAAAATGTGGTGCAATGGATGTTGCATTTGATGTGTTCAAAAAAATGCCGGA ACGCGATTGGATTTCTTATGATACAATGATCACATGGCTCGCTAAGAATGAACACGGGGACGATGCAATCGATCTGTTCGCCGAGTTTAAGCAAGCTGGA CTTATTCTGAATGCTAAGATGTTTATTGGAGTCTTTTCTGCTTGTGCTGCTGCGGGAGATATTGACGAGGGAATGCTGCACTTTGCTTCCATGACACAGG ATTATGGTATCGTTCCGACGATAGAGCATTACATTGGCATTGTGCAAATGTTGGGAAGTGCTGGATATCTTGATGAAGCATTAGAGTTTATTGACAAAAT CCCTCTCGAACCAAGTGTAGATATCTGGGAAACCTTAATGGGTCTTTGCAGAGTTCACGGAAACACAGAGCTGGGTGATCGTTGTGCTGAAATAGTTGAG CAGCTGGACCCCACTCGTCTACATGAACGATCGAAGGCTGGTCTTATACCAGTTAACGCTTCTGACATTGCTAATGAAAAGGAGAAGAAGAAGGCTGCAC AAAACCTTCTAGAACTGAGGAGCAGGGTCCACGAATACCGAGCAGGGGATAGATCTCATCCTAATAACGATAAGATATATGCTCTGCTGAGGAACTTGAA GGTTCACATGAAAGAGTGTGGTTATGTTCCCGAGCCGAAATTTGTACTGCATGACATAGACCCAGAAAGCAAGGAGGAAGCCCTTCATGCACATAGTGAA AGGCTCGCTACTGCCCAAGGCCTTCTCACTAGTCCTCCTCGTACTCCGATTAGAGTAATTAAGAATCTGCGCGTGTGCGGTGATTGTCATAATGCGTGTA AGATTATATCGAAGATTGTCGGCAGGGAGCTGATAATGAGAGATGCGAAGAGGTTCCATCACTTCAAAGATGGGGTGTGCTCATGCCGTGACTATTGGTG A
AA sequence Show only first row Show all	>Lus10028413 pacid=23165965 polypeptide=Lus10028413 locus=Lus10028413.g ID=Lus10028413.BGIv1.0 annot-version=v1.0 MSKKGVCLLAVKSLSTSPKLRFTGEPSCPIKPTFFSRNLNTAQSLELQREDFSGCPPGENQTPLGPWNNSKAAIGLNPNQGFGGSPGNPWSNQDRQNGYL GHMENRTSVHQNSAIEKNGYFDGNSGYRNDQFQLQQNIQGNVPNLWGSRSHSQQNVHASDMPNSWSPGRNSDGVYRRNDNLQGSLPSQGGFDNYSSYNGQ HTQYGIDDRHAGGSGTMPNRPLTMRDQQNHNVGEYQQGVVGIQGGAVASPQQSNNNNGVGAGGFGGTVDGDPMEEMNRFCNEGKAKEAVEMLQKLQGMQV TVDLDRVLKLVHVCGDCMALAEAKLVHEHIKRAIPSLDINTYNKILEMYSKCGAMDVAFDVFKKMPERDWISYDTMITWLAKNEHGDDAIDLFAEFKQAG LILNAKMFIGVFSACAAAGDIDEGMLHFASMTQDYGIVPTIEHYIGIVQMLGSAGYLDEALEFIDKIPLEPSVDIWETLMGLCRVHGNTELGDRCAEIVE QLDPTRLHERSKAGLIPVNASDIANEKEKKKAAQNLLELRSRVHEYRAGDRSHPNNDKIYALLRNLKVHMKECGYVPEPKFVLHDIDPESKEEALHAHSE RLATAQGLLTSPPRTPIRVIKNLRVCGDCHNACKIISKIVGRELIMRDAKRFHHFKDGVCSCRDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25580			Tetratricopeptide repeat (TPR)...		Lus10028413 [exp]	0	1
AT3G13224			RNA-binding (RRM/RBD/RNP motif...		Lus10043154 [exp]	1.0	0.9441
AT3G01610		CDC48C, EMB1354	embryo defective 1354, cell di...		Lus10039722 [exp]	1.4	0.9376
AT2G26140		FTSH4	FTSH protease 4 (.1)		Lus10013521 [exp]	2.8	0.9318
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015204 [exp]	7.1	0.9374
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Lus10011317 [exp]	8.1	0.9328
AT1G77030			hydrolases, acting on acid anh...		Lus10028644 [exp]	10.6	0.9361
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10031481 [exp]	10.9	0.9321
AT4G19006			Proteasome component (PCI) dom...		Lus10012120 [exp]	18.8	0.9178
AT3G17465		RPL3P	ribosomal protein L3 plastid (...		Lus10017709 [exp]	20.3	0.9323
AT3G09720			P-loop containing nucleoside t...		Lus10013644 [exp]	23.9	0.9293

Compare expression of checked genes

Lus10028413 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.