Plant FIBer expression Database

Lus10028414 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G66090 184 / 5e-59 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041868
[exp]
318 / 1e-111 AT5G66090 234 / 1e-78 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G109100
[exp]
237 / 1e-79 AT5G66090 229 / 2e-76 unknown protein
PFAM info
Representative CDS sequence
>Lus10028414 pacid=23166116 polypeptide=Lus10028414 locus=Lus10028414.g ID=Lus10028414.BGIv1.0 annot-version=v1.0
ATGGCGTTTGCTCACTATCTGCTCCCTGTTCCCGTCGATACTTGCTCTAATCGAAGCAGAGTTTCAATCTCCAGCTCATCTCCCTCTGGCGAGTCGTCTT
CTTTTCCAGCTCATTTCTCATCTCGCTGCTCTCTAGCGTTTAATTCGCGCAAATTCCCAGTCTTCTCCAGAATCGGACAAAAGGTTAAGGCCGAGGGACC
AGAATCTGAAGTGGATTTGAGTGTAGCGGATGCTTACACCCGTTTCAAGCATTTACTTCTGCCGATCACCGGTACCAACCCTTACCTTTCTGAAGGAACT
AGACAGGCTGCTGCAACTGCTGGTGCATTGGCCAAGAAATATGAAGCGGATATCACAGTCGTTGTGATTGATGAAAGGCAGAAAGAAACCTTTCCAGAAC
ATGAAACCCAAATGTCAAGCATCCGGTGGCACCTCTCTGAAGTTGGGTTCCAGGAGTTTAAGCTGCTGGAGCGATTTGGGGAGGGAAAGAAGCCTACAGC
CATTATTGGCGAGGGTGCTGATGACATGAACTTGGATTTGGTGGTCATAAGCATGGAAGCGATTCACTCCAAGCATGTAGATGCCAACCTGCTGGCAGAG
TTCATCCCCTGCCCTGTTTTGCTCTTGCCCTTGTAG
AA sequence
>Lus10028414 pacid=23166116 polypeptide=Lus10028414 locus=Lus10028414.g ID=Lus10028414.BGIv1.0 annot-version=v1.0
MAFAHYLLPVPVDTCSNRSRVSISSSSPSGESSSFPAHFSSRCSLAFNSRKFPVFSRIGQKVKAEGPESEVDLSVADAYTRFKHLLLPITGTNPYLSEGT
RQAAATAGALAKKYEADITVVVIDERQKETFPEHETQMSSIRWHLSEVGFQEFKLLERFGEGKKPTAIIGEGADDMNLDLVVISMEAIHSKHVDANLLAE
FIPCPVLLLPL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G66090 unknown protein Lus10028414
[exp]
0 1
AT5G66090 unknown protein Lus10041868
[exp]
2.4 0.8222
AT3G06610 DNA-binding enhancer protein-r... Lus10037773
[exp]
7.7 0.8231
AT5G59460 scarecrow-like transcription f... Lus10004969
[exp]
10.4 0.8234
AT1G08770 PRA1.E prenylated RAB acceptor 1.E (.... Lus10021996
[exp]
11.8 0.7547
AT5G65270 AtRABA4a RAB GTPase homolog A4A (.1) Lus10035924
[exp]
12.0 0.8135
AT5G62200 Embryo-specific protein 3, (AT... Lus10031684
[exp]
12.0 0.7904
AT5G54750 Transport protein particle (TR... Lus10028720
[exp]
13.1 0.7915
AT3G04310 unknown protein Lus10032791
[exp]
13.7 0.6822
AT1G77350 unknown protein Lus10018864
[exp]
15.4 0.7806
AT3G62790 NADH-ubiquinone oxidoreductase... Lus10021691
[exp]
16.9 0.7647

Lus10028414 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.