Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63855 248 / 4e-84 Putative methyltransferase family protein (.1.2.3) AT5G27410 56 / 7e-09 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) AT5G27400 55 / 7e-09 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G26810 50 / 2e-07 Putative methyltransferase family protein (.1.2.3) AT4G35987 50 / 3e-07 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G73320 49 / 7e-07 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G01470 48 / 9e-07 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT1G79915 47 / 3e-06 Putative methyltransferase family protein (.1) AT4G14000 41 / 0.0004 Putative methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041869 [exp] 418 / 7e-151 AT1G63855 255 / 8e-87 Putative methyltransferase family protein (.1.2.3) Lus10015166 [exp] 68 / 2e-13 AT5G27400 377 / 9e-131 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10031516 [exp] 59 / 3e-10 AT5G27400 364 / 1e-125 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10031894 [exp] 55 / 8e-09 AT1G73320 362 / 1e-126 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10028446 [exp] 52 / 7e-08 AT4G35987 402 / 6e-142 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10002489 [exp] 50 / 3e-07 AT5G01470 343 / 2e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10041898 [exp] 47 / 4e-06 AT5G13700 349 / 2e-113 polyamine oxidase 1 (.1) Lus10004816 [exp] 46 / 7e-06 AT5G01470 342 / 6e-118 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10008886 [exp] 41 / 0.0004 AT4G14000 300 / 2e-102 Putative methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G109000 [exp] 348 / 2e-123 AT1G63855 261 / 5e-89 Putative methyltransferase family protein (.1.2.3) Potri.009G068400 [exp] 56 / 3e-09 AT2G26810 345 / 2e-121 Putative methyltransferase family protein (.1.2.3) Potri.005G039000 [exp] 53 / 5e-08 AT5G27400 361 / 6e-123 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G153900 [exp] 51 / 2e-07 AT1G73320 347 / 2e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G148200 [exp] 47 / 2e-06 AT5G44170 46 / 7e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.006G100100 [exp] 46 / 4e-06 AT5G01470 338 / 4e-118 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.001G181200 [exp] 47 / 5e-06 AT1G79915 308 / 4e-104 Putative methyltransferase family protein (.1) Potri.007G057000 [exp] 42 / 0.0001 AT4G35987 410 / 5e-145 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF10294 [flax] [poplar] Methyltransf_16 Lysine methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10028415 pacid=23166118 polypeptide=Lus10028415 locus=Lus10028415.g ID=Lus10028415.BGIv1.0 annot-version=v1.0 ATGACGACGGTTTCCGTACATGAATTCGGCGACGAAGTTCCGCCGGAGCTTTCCATCTCAATCGTCGAGGATATGAAGGAGGAGTACGGGCTGTTTGTGT GGCCGTGCAGTATCATTCTGGCCGAATATGTTTGGCTACAACGGTGGCGCTTCTCCGGCGCCAGAGTAGTGGAGCTTGGGGCGGGGACTTCATTGCCGGG AATAGTGGCCGCCAAGCTGGGTTCCGATGTCACTCTCACCGACGACGCCAATAGAACCGAGGTGCTGGACAACATGAGGAAAGTATGCGACCTTAACAAC GTTGAATGTAAAGTGTTAGGACTTACCTGGGGAGTGTGGGAGTCGTCCATATTCGATTTACAGCCAAGTTTCATACTAGGGGCTGATGTTCTTTACGACA CCAGTGCTTTTGATGACCTGTTTGCGACGGTGACATTTCTGCTTCAGAACTCTCCAGGGTCAGTCTTCATAACAACCTATCACAACCGGAGTGGGCATCA TCTTATCGAGCTGTTAATGAAGAAATGGGGGTTGAAATGCTCAAAGCTCGTTGATGGTTTCTCGTTCATGCCACCTCAAAACGCATCTGGTTTAAGTGGC AATATTCAGTTGGCAGAGATTATATTAGAGCGATGA
AA sequence Show only first row Show all	>Lus10028415 pacid=23166118 polypeptide=Lus10028415 locus=Lus10028415.g ID=Lus10028415.BGIv1.0 annot-version=v1.0 MTTVSVHEFGDEVPPELSISIVEDMKEEYGLFVWPCSIILAEYVWLQRWRFSGARVVELGAGTSLPGIVAAKLGSDVTLTDDANRTEVLDNMRKVCDLNN VECKVLGLTWGVWESSIFDLQPSFILGADVLYDTSAFDDLFATVTFLLQNSPGSVFITTYHNRSGHHLIELLMKKWGLKCSKLVDGFSFMPPQNASGLSG NIQLAEIILER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63855			Putative methyltransferase fam...		Lus10028415 [exp]	0	1
AT3G29010			Biotin/lipoate A/B protein lig...		Lus10003218 [exp]	2.4	0.9086
AT3G56320			PAP/OAS1 substrate-binding dom...		Lus10029045 [exp]	4.7	0.9186
AT4G17020			transcription factor-related (...		Lus10012849 [exp]	7.3	0.9135
AT3G54480		SKP5, SKIP5	SKP1/ASK-interacting protein 5...		Lus10039556 [exp]	9.5	0.8826
AT5G64730			Transducin/WD40 repeat-like su...		Lus10002090 [exp]	9.9	0.8907
AT3G44680		HDA09, HDA9	histone deacetylase 9 (.1)		Lus10020570 [exp]	12.0	0.8943
AT1G12580		PEPKR1	phosphoenolpyruvate carboxylas...		Lus10038889 [exp]	23.0	0.8760
AT3G50000		ATCKA2, CKA2	"casein kinase II, alpha chain...		Lus10011534 [exp]	24.5	0.8707
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Lus10027446 [exp]	27.0	0.8921
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10002484 [exp]	29.7	0.9025

Compare expression of checked genes

Lus10028415 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.