Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13440 266 / 2e-91 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) AT5G13430 265 / 3e-91 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) AT4G03280 56 / 3e-10 PGR1, PETC PROTON GRADIENT REGULATION 1, photosynthetic electron transfer C (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035118 [exp] 284 / 9e-99 AT5G13430 379 / 8e-134 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) Lus10031982 [exp] 284 / 1e-98 AT5G13430 379 / 4e-134 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) Lus10041870 [exp] 284 / 2e-98 AT5G13430 378 / 1e-133 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) Lus10041513 [exp] 279 / 2e-96 AT5G13430 376 / 9e-133 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) Lus10012580 [exp] 274 / 9e-95 AT5G13430 373 / 2e-131 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) Lus10039739 [exp] 56 / 6e-10 AT4G03280 306 / 1e-106 PROTON GRADIENT REGULATION 1, photosynthetic electron transfer C (.1.2) Lus10018521 [exp] 56 / 6e-10 AT4G03280 306 / 1e-106 PROTON GRADIENT REGULATION 1, photosynthetic electron transfer C (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G067900 [exp] 268 / 3e-92 AT5G13430 413 / 4e-147 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) Potri.003G162200 [exp] 263 / 1e-90 AT5G13430 417 / 8e-149 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) Potri.019G118500 [exp] 51 / 2e-08 AT4G03280 318 / 4e-111 PROTON GRADIENT REGULATION 1, photosynthetic electron transfer C (.1.2) Potri.013G148900 [exp] 51 / 2e-08 AT4G03280 311 / 3e-108 PROTON GRADIENT REGULATION 1, photosynthetic electron transfer C (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0516 [flax] [poplar] ISP-domain PF00355 [flax] [poplar] Rieske Rieske [2Fe-2S] domain
Representative CDS sequence Show only first row Show all	>Lus10028416 pacid=23166008 polypeptide=Lus10028416 locus=Lus10028416.g ID=Lus10028416.BGIv1.0 annot-version=v1.0 ATGTCTGCAAGTAAGGATGTGCTGGCATTGGCATCGCTCGAGGTCGATCTCTCCAGCATTGAACCAGGGACCACTGTAACTGTGAAGTGGCGTGGTAAGC CGGTTTTCATCAGGCGCCGAACAGAGGATGATATCCAGTTGGCAAACAGTGTTGAGTTGGCATCTCTCCGAGACCCACAGCCAGATGGTGACCGCGTGAA GAACCCGGAATGGCTTATCGTTATCGGGGTGTGCACACATCTGGGTTGCATTCCATTGCCGAATGCTGGTGATTTCGGCGGGTGGTTCTGCCCCTGCCAT GGATCTCATTATGACATCTCCGGCCGGATAAGGAAGGGCCCTGCTCCATACAACTTGGAGGTGCCTACGTATTCCTTTTTGGAAGACAACAAGCTACTCA TTGGCTGA
AA sequence Show only first row Show all	>Lus10028416 pacid=23166008 polypeptide=Lus10028416 locus=Lus10028416.g ID=Lus10028416.BGIv1.0 annot-version=v1.0 MSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDIQLANSVELASLRDPQPDGDRVKNPEWLIVIGVCTHLGCIPLPNAGDFGGWFCPCH GSHYDISGRIRKGPAPYNLEVPTYSFLEDNKLLIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13440			Ubiquinol-cytochrome C reducta...		Lus10028416 [exp]	0	1
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10029784 [exp]	4.7	0.7892
AT2G34585			unknown protein		Lus10038503 [exp]	4.9	0.7666
AT5G55670			RNA-binding (RRM/RBD/RNP motif...		Lus10038758 [exp]	8.9	0.7405
AT5G27930			Protein phosphatase 2C family ...		Lus10029874 [exp]	9.2	0.7658
AT3G45210			Protein of unknown function, D...		Lus10000724 [exp]	13.8	0.7445
AT4G10925			Nuclear transport factor 2 (NT...		Lus10023064 [exp]	14.5	0.7416
AT5G53020			Ribonuclease P protein subunit...		Lus10022396 [exp]	15.2	0.7564
AT3G57080		RPB5B, NRPE5	RNA POLYMERASE II FIFTH LARGES...		Lus10018022 [exp]	15.9	0.7272
AT3G51370			Protein phosphatase 2C family ...		Lus10028408 [exp]	21.5	0.7445
AT5G23680			Sterile alpha motif (SAM) doma...		Lus10036012 [exp]	27.5	0.7119

Compare expression of checked genes

Lus10028416 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.