Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35900 57 / 1e-11 bZIP ATBZIP14, FD-1, FD Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G17770 51 / 9e-10 bZIP FDP, ATBZIP27 FD PARALOG, basic region/leucine zipper motif 27 (.1.2) AT3G56850 35 / 0.0007 bZIP DPBF3, AREB3 ABA-responsive element binding protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006489 [exp] 39 / 6e-05 AT1G45249 297 / 1e-97 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G109500 [exp] 54 / 1e-10 AT4G35900 179 / 5e-55 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.002G018400 [exp] 49 / 1e-08 AT4G35900 133 / 5e-38 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.005G243400 [exp] 44 / 7e-07 AT4G35900 117 / 4e-31 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.016G024000 [exp] 37 / 0.0002 AT3G56850 241 / 4e-79 ABA-responsive element binding protein 3 (.1) Potri.006G025800 [exp] 36 / 0.0005 AT3G56850 271 / 7e-91 ABA-responsive element binding protein 3 (.1) Potri.002G125400 [exp] 35 / 0.0009 AT1G45249 306 / 4e-100 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028419 pacid=23165971 polypeptide=Lus10028419 locus=Lus10028419.g ID=Lus10028419.BGIv1.0 annot-version=v1.0 ATGTTCCTCCTTTTTTCACTTCAGGCGTACACCAATGAATTGGAGCTGGAAGTTCAGCATCTCATGACAGAAAATGCGAAGCTGAAGAAGCAACAAGAAG AGTTGCGGTTGGCTGCAGCAGCGGCTCAGGTTGGCAAAAAGACCACTCTATTCCGGACGTCAACATTCTGA
AA sequence Show only first row Show all	>Lus10028419 pacid=23165971 polypeptide=Lus10028419 locus=Lus10028419.g ID=Lus10028419.BGIv1.0 annot-version=v1.0 MFLLFSLQAYTNELELEVQHLMTENAKLKKQQEELRLAAAAAQVGKKTTLFRTSTF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35900	bZIP	ATBZIP14, FD-1,...	Basic-leucine zipper (bZIP) tr...		Lus10028419 [exp]	0	1
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Lus10024901 [exp]	4.6	0.8739
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10042626 [exp]	12.1	0.9086
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10014359 [exp]	19.1	0.8996
AT1G23220			Dynein light chain type 1 fami...		Lus10021793 [exp]	21.6	0.8775
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10040256 [exp]	24.2	0.8875
					Lus10014949 [exp]	27.7	0.8775
AT2G14660			unknown protein		Lus10033766 [exp]	28.8	0.8452
					Lus10007416 [exp]	33.4	0.8740
AT5G04347			Plant self-incompatibility pro...		Lus10022824 [exp]	35.8	0.7547
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10037939 [exp]	36.5	0.8121

Compare expression of checked genes

Lus10028419 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.