Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35920 592 / 0 MCA1 mid1-complementing activity 1, PLAC8 family protein (.1.2.3) AT2G17780 494 / 6e-173 MCA2 mid1-complementing activity 2, PLAC8 family protein (.1.2.3.4) AT5G35525 68 / 2e-13 PLAC8 family protein (.1) AT1G14870 66 / 1e-12 AtPCR2, PCR2 PLANT CADMIUM RESISTANCE 2 (.1) AT1G14880 61 / 5e-11 AtPCR1, PCR1 PLANT CADMIUM RESISTANCE 1 (.1) AT3G18470 58 / 4e-10 PLAC8 family protein (.1) AT1G49030 60 / 6e-10 PLAC8 family protein (.1) AT3G18460 58 / 1e-09 PLAC8 family protein (.1) AT1G52200 56 / 8e-09 PLAC8 family protein (.1) AT2G40935 55 / 2e-08 PLAC8 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041875 [exp] 854 / 0 AT4G35920 624 / 0.0 mid1-complementing activity 1, PLAC8 family protein (.1.2.3) Lus10014256 [exp] 709 / 0 AT4G35920 625 / 0.0 mid1-complementing activity 1, PLAC8 family protein (.1.2.3) Lus10025955 [exp] 708 / 0 AT4G35920 621 / 0.0 mid1-complementing activity 1, PLAC8 family protein (.1.2.3) Lus10004063 [exp] 57 / 2e-09 AT1G68630 132 / 2e-40 PLAC8 family protein (.1) Lus10043325 [exp] 52 / 2e-07 AT1G14870 187 / 4e-61 PLANT CADMIUM RESISTANCE 2 (.1) Lus10021696 [exp] 52 / 3e-07 AT1G14870 177 / 5e-57 PLANT CADMIUM RESISTANCE 2 (.1) Lus10019478 [exp] 50 / 8e-07 AT1G14870 184 / 7e-60 PLANT CADMIUM RESISTANCE 2 (.1) Lus10008890 [exp] 46 / 8e-06 AT1G68630 119 / 6e-35 PLAC8 family protein (.1) Lus10005257 [exp] 43 / 0.0002 AT2G40935 228 / 6e-77 PLAC8 family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G110000 [exp] 640 / 0 AT4G35920 600 / 0.0 mid1-complementing activity 1, PLAC8 family protein (.1.2.3) Potri.010G184700 [exp] 339 / 1e-112 AT4G35920 300 / 9e-99 mid1-complementing activity 1, PLAC8 family protein (.1.2.3) Potri.012G092200 [exp] 65 / 4e-12 AT1G14870 164 / 2e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.012G060900 [exp] 62 / 5e-10 AT1G49030 199 / 2e-62 PLAC8 family protein (.1) Potri.010G108900 [exp] 59 / 8e-10 AT1G14870 142 / 4e-43 PLANT CADMIUM RESISTANCE 2 (.1) Potri.007G042800 [exp] 57 / 3e-09 AT1G14870 152 / 7e-48 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132900 [exp] 56 / 1e-08 AT1G14870 189 / 7e-62 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G109100 [exp] 56 / 1e-08 AT1G14870 165 / 1e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G127700 [exp] 52 / 1e-07 AT1G68610 174 / 5e-56 PLANT CADMIUM RESISTANCE 11 (.1) Potri.006G024900 [exp] 51 / 4e-07 AT2G40935 261 / 6e-90 PLAC8 family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04749 [flax] [poplar] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Lus10028421 pacid=23166065 polypeptide=Lus10028421 locus=Lus10028421.g ID=Lus10028421.BGIv1.0 annot-version=v1.0 ATGGTGGGTTTGACTACAATTTCCAGGGCTCTGAATCAAATCTACCTTTTGCTTTTCTGGGTTTTCTTCTGTGGTCTTTGCAAAATTGAGCAAGAAGATC GCAATTCTCATCCATTGCTGTTTTTTCCCCTTCTCTCAACTGTTTCTGCTTTCTTTGGTGGTTCTGTTGCAGCTAAAAGCTCCAAGCCTGGAAATGTGTT CAGATCAGATTACCTTCTGAGGAAGCTACCTCAAGATTCCAACCTTTCCATTTATGTTAACCTGTTTTACTTAGACGTCAAGAGGTTTAGTTTGTTTACC GTTGGGGAAAGAAAGATGTCAGGTTGGGGTAATTTCGGGGAGATTGCAAATGTGGCACAAATCACTGGCCTTGATGCAGTGCGGCTAATTGGCTTGATAG TGAAAGCGGCGAGCACTGCAAGAATGCATAAGAAGAACTGCAGGCAGTTTGCTCAGCATCTCAAGTTGATTGGGGGTTTATTGGAGCAACTTAAGATCTC AGAGCTCAAGAAGTACCCTGTGACAAGGGAGCCGCTTGAACAGCTTGAAGATGCACTGAGGAGGTCTTACATTTTGGTGAATAGCTGCCAGGATAAAAGC TATCTCTACTTGCTTGCTATGGGATGGAACATTGTCTACCAATTTCGGAAAGCACAGAACGAGATCGATCGCTACTTGAGGCTCATTCCTCTCATCACGC TGGTCGACAACACTCGAATCAGGGAGAGACTAGAAGACATCGAGAGGGATCAACGCGAGTACACGTTGGATGAAGAGGACAGAAAGGTTCAAGATTTCAT CTTGAAATCAGAATCTGTAAAAGATCAAACTGCGGTGTTGAAGAAAACGCTTTCGACTTCGTATCCGAACATGTGTTTCAATGAAGCTCTGCAAAAGGAA AGCGAGAAGCTACAGATGGAGCTACAAATGTCACAAGCAAATATGGATGTCAACCAATGTGAGGTTATCCAACACCTGCTGGAAGTTACAGAAACTGCAG CAGCAAATGTTCCCCCGGAGAAGAGTTCTCCTAAGAAGGCTTCAAAGAGATTGGAGCCTAATTTATCAGACGTGAGTGAAAAGGAACGTACATTTGATCA CAGCTATCCGAGCAAAAAAGATTCTCGTGCCGCCTCAAGAAACACCTCCTCAGTTTCTTCAGGGCATGATTTGCTGACAAGAAGAGGTTCTACTTCTAGT CACGATGAAGAATGGCACACTGATTTGCTTGGTTGTTGTTCGGAACCTCTACTATGTATAAAGACACTCTTTTATCCTTGTGGCACATTCTCGAGGATCG CCACTGCAGCATCAAACAGGCACATGTCTTCAGGAGAAGCATGCAACGAATTGATGGCATATTCATTAATACTTTCGTGTTGCTGTTACACCTGTTGCAT GAGAAGGAAGCTCCGCAACATATTTAACATCTCTGGAGGCTTGGTCGATGATTTTCTATCACATTTGATGTGCTGTTGCTGTGCTCTAGTCCAAGAATGG CGAGAAGTTGAGATTCGAGGGGCTTACGGTCCTCAGAAGACAAAAACAAGCCCACCAGTGTCACAGTCGATGGAGTCCTAA
AA sequence Show only first row Show all	>Lus10028421 pacid=23166065 polypeptide=Lus10028421 locus=Lus10028421.g ID=Lus10028421.BGIv1.0 annot-version=v1.0 MVGLTTISRALNQIYLLLFWVFFCGLCKIEQEDRNSHPLLFFPLLSTVSAFFGGSVAAKSSKPGNVFRSDYLLRKLPQDSNLSIYVNLFYLDVKRFSLFT VGERKMSGWGNFGEIANVAQITGLDAVRLIGLIVKAASTARMHKKNCRQFAQHLKLIGGLLEQLKISELKKYPVTREPLEQLEDALRRSYILVNSCQDKS YLYLLAMGWNIVYQFRKAQNEIDRYLRLIPLITLVDNTRIRERLEDIERDQREYTLDEEDRKVQDFILKSESVKDQTAVLKKTLSTSYPNMCFNEALQKE SEKLQMELQMSQANMDVNQCEVIQHLLEVTETAAANVPPEKSSPKKASKRLEPNLSDVSEKERTFDHSYPSKKDSRAASRNTSSVSSGHDLLTRRGSTSS HDEEWHTDLLGCCSEPLLCIKTLFYPCGTFSRIATAASNRHMSSGEACNELMAYSLILSCCCYTCCMRRKLRNIFNISGGLVDDFLSHLMCCCCALVQEW REVEIRGAYGPQKTKTSPPVSQSMES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10028421 [exp]	0	1
AT1G63430			Leucine-rich repeat protein ki...		Lus10008310 [exp]	1.0	0.8881
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10041875 [exp]	2.4	0.8627
AT2G25220			Protein kinase superfamily pro...		Lus10005345 [exp]	3.5	0.8476
AT5G48385			FRIGIDA-like protein (.1)		Lus10004132 [exp]	5.2	0.8522
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10020413 [exp]	8.5	0.8376
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10004918 [exp]	11.2	0.8416
AT1G75060			unknown protein		Lus10018805 [exp]	12.6	0.8010
AT5G13460		IQD11	IQ-domain 11 (.1)		Lus10005315 [exp]	14.7	0.8374
AT5G63900			Acyl-CoA N-acyltransferase wit...		Lus10000368 [exp]	15.3	0.8448
AT4G02980		ABP1	endoplasmic reticulum auxin bi...		Lus10027985 [exp]	15.5	0.8120

Compare expression of checked genes

Lus10028421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.