Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35930 267 / 4e-89 F-box family protein (.1) AT1G61340 61 / 3e-11 F-box family protein (.1.2) AT4G21510 61 / 4e-11 F-box family protein (.1) AT4G05010 59 / 1e-10 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041876 [exp] 490 / 1e-177 AT4G35930 265 / 3e-88 F-box family protein (.1) Lus10025956 [exp] 353 / 2e-123 AT4G35930 301 / 2e-102 F-box family protein (.1) Lus10018432 [exp] 55 / 6e-09 AT4G21510 102 / 3e-27 F-box family protein (.1) Lus10011255 [exp] 53 / 2e-08 AT4G21510 114 / 1e-31 F-box family protein (.1) Lus10022370 [exp] 50 / 7e-08 AT4G21510 67 / 1e-14 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G110200 [exp] 342 / 6e-119 AT4G35930 332 / 4e-114 F-box family protein (.1) Potri.004G034400 [exp] 70 / 3e-14 AT1G61340 127 / 2e-37 F-box family protein (.1.2) Potri.011G042800 [exp] 65 / 2e-12 AT4G21510 115 / 4e-32 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028422 pacid=23166173 polypeptide=Lus10028422 locus=Lus10028422.g ID=Lus10028422.BGIv1.0 annot-version=v1.0 ATGGGGAAACTGTTTCCAACAGATGGGGACTCCATTACACCCAGGCAGAGAAGGCGAATGCGGTGTTCAACTGGAAAGTACCTGAAACCTGGTGCGCTAG CTCAGCTGCGGAATAGCAAAGCATCAATGAGAAAGTCATGCGCTGGTCTGGGCAAAAAGAGGGTTGCTTTGTTTGGCACCACTAAATTAGACGATGTTAA GATTGAAAATAAAGTTGCTCCGCTTGAGAAGAGTCCATTAATCCAGTCGCCTGTGGATCTGCTTAAACAGAAGCCCTTCATGAGAACACCTAAGACTCCT CGAGCTGAATATGATGGATCTGAATCAAGGCTAGAGTCTCTTCCCATGGAGTTGCTGGTTAAAGTATTATGTCACCTGCACCATGACCAGCTTAGTGCAG TCTTCAAGGTTTCCAATAGGATTCGAAAAGCTGCTGTGATTGCAAGACAGTTCCATTTTGATTATACCACCCCAGATCGTTCTAGACAAGAGATGCTAAG AACAATAACACCACTCCCCACAGAAAACTGCCCTTTTGTTGGGAAGGGAGATGGAAAGGCCATCTTCATACCGAGCCCACATACTCCAAAAGCACCAAGA CACGGTCCTCGACCACCTTCTAAACTCAAAATTGCAGATATAAAGCAGACTGCAGCTGTTCTGTTCCAGGATCCCGCCTTTCTCCCCGCTCCAAGATGTG TTATGGTTTCTGCTTTGTCAAAACCCATGTGCAAGTCTTTGGCTTCTAATCGTGTTCTCTTCTATGAGGATGAGCTGTGCCACGCCGTTGCTCAAAATAA GCTTCTGTAG
AA sequence Show only first row Show all	>Lus10028422 pacid=23166173 polypeptide=Lus10028422 locus=Lus10028422.g ID=Lus10028422.BGIv1.0 annot-version=v1.0 MGKLFPTDGDSITPRQRRRMRCSTGKYLKPGALAQLRNSKASMRKSCAGLGKKRVALFGTTKLDDVKIENKVAPLEKSPLIQSPVDLLKQKPFMRTPKTP RAEYDGSESRLESLPMELLVKVLCHLHHDQLSAVFKVSNRIRKAAVIARQFHFDYTTPDRSRQEMLRTITPLPTENCPFVGKGDGKAIFIPSPHTPKAPR HGPRPPSKLKIADIKQTAAVLFQDPAFLPAPRCVMVSALSKPMCKSLASNRVLFYEDELCHAVAQNKLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35930			F-box family protein (.1)		Lus10028422 [exp]	0	1
AT5G01910			unknown protein		Lus10022734 [exp]	2.0	0.9508
AT2G01630			O-Glycosyl hydrolases family 1...		Lus10013465 [exp]	2.4	0.9511
AT3G18630		ATUNG	uracil dna glycosylase (.1)		Lus10012898 [exp]	3.5	0.9370
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10041735 [exp]	5.5	0.9466
AT3G19590		BUB3.1	BUB \(BUDDING UNINHIBITED BY B...		Lus10023814 [exp]	6.7	0.9222
AT3G02400	FHA		SMAD/FHA domain-containing pro...		Lus10018056 [exp]	6.9	0.9408
AT4G10630			Glutaredoxin family protein (....		Lus10033238 [exp]	9.5	0.9252
AT5G25090		AtENODL13	early nodulin-like protein 13 ...		Lus10026880 [exp]	10.2	0.9390
AT4G10630			Glutaredoxin family protein (....		Lus10008270 [exp]	11.5	0.9257
AT2G23530			Zinc-finger domain of monoamin...		Lus10000845 [exp]	11.5	0.9343

Compare expression of checked genes

Lus10028422 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.