Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14820 316 / 1e-106 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75890 299 / 1e-99 EXL2 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G42170 297 / 6e-99 SGNH hydrolase-type esterase superfamily protein (.1) AT1G75900 295 / 4e-98 EXL3 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20120 291 / 3e-96 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75880 288 / 2e-95 EXL1 SGNH hydrolase-type esterase superfamily protein (.1.2) AT1G59406 287 / 2e-95 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58725 287 / 2e-95 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20132 284 / 2e-93 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G04570 276 / 7e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041877 [exp] 655 / 0 AT3G14820 321 / 1e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028425 [exp] 485 / 3e-168 AT1G75900 333 / 8e-109 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028424 [exp] 454 / 9e-161 AT3G14820 298 / 2e-99 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10014257 [exp] 427 / 8e-146 AT3G14820 282 / 1e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10020010 [exp] 400 / 5e-135 AT2G19080 308 / 1e-99 metaxin-related (.1) Lus10003717 [exp] 328 / 3e-111 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 326 / 3e-110 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013572 [exp] 323 / 4e-109 AT1G75900 435 / 2e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003723 [exp] 302 / 3e-101 AT5G42170 308 / 1e-103 SGNH hydrolase-type esterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G018800 [exp] 334 / 8e-113 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 326 / 3e-110 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 270 / 3e-88 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.009G151000 [exp] 267 / 2e-87 AT5G22810 504 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160100 [exp] 266 / 6e-87 AT2G04570 497 / 5e-178 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G062000 [exp] 265 / 3e-86 AT5G45960 440 / 8e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G191400 [exp] 264 / 5e-86 AT3G16370 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G205100 [exp] 261 / 1e-84 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.006G118300 [exp] 259 / 2e-84 AT5G03820 478 / 2e-170 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.014G160200 [exp] 258 / 6e-84 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10028423 pacid=23166054 polypeptide=Lus10028423 locus=Lus10028423.g ID=Lus10028423.BGIv1.0 annot-version=v1.0 ATGGCTGCTGGTACTTTTCTCCTTGTTGTTGCATTATTGATCAGTTCAGCTGCTGACATGACTGTTACAGCACAAAGCAGCAGTATTAATGGCGGAGCAA CTGTGCCAGCAGTTTTTGTGTTTGGTGACTCTTTAGTCGACACTGGGAACAATAACTACATCCCAATCACCATTGCGAAGAGCAACTTCCCTCCTTACGG CAGAGACTTCACTGACGGATTCCCAACCGGAAGGTTCAGCAATGGAAGAAGTGTCTCTGACTTCATTGCCCAAATCCTTGGAGTGAAAACGCTGCTGCCG CCGTATCTGGATCCTACGTTAGAGCTTGAACAACTGCTTACTGGTGTGTCTTTTGCTTCTTCTGGTGCTGGTTACGACCCTCGCACCTCCCAGTTAGCTA ATGCAATACAAATCACAGAACAGTTAGATTTCCTAGGAGACTACATCAAGAAGATGAATGCATCTATTGGGGAAGAAAGAACAGCATCTATTATATCCCA GAGTGCATACATAAGTGTAATAGGAAGCAATGATGTTTCCAATATGTACCCTCTGGTGCAGGATTTCTACGACGAGAATTCCTACACTGATCGGATGATC ACCCTGGCTTTAGACTTTTATCAGCAATTGTATAAACTTGGAGCAAGGAGAATTGGGTTGCTAACCTTACCTCCAACAGGCTGTGCACCCGCCATTCGAA TTCTCGATGGAGGACCGAATAGGCTTTGTTACGAAAGCCTGAACAGACGTGTCAGGCTTTTCAACTCCAAGCTGTCTTTGTTGGTTGATAAGTTGAATGC AGAGCTTCCAGGTGCCAACTTCGTGCTCTTTGACCTCTACAATCCTGTGATTTCCCTCATACAAAATCCTGCTCCATATGGGTTCAAAGAGGTCTCGAGA GGGTGCTGCGGAACTGGAAATATCGAGGTTGCAGTGCTGTGTGTACTTCCAGGCACTTGCCCTGACGCCTCCAAATACCTGTTCTGGGACAGTTATCATC CCACTGAAAGAGCATCGGGGATACTGGTACATCAAGTTCTTAGTCCAAAGTTGAGGAAACTGGTCGGATAA
AA sequence Show only first row Show all	>Lus10028423 pacid=23166054 polypeptide=Lus10028423 locus=Lus10028423.g ID=Lus10028423.BGIv1.0 annot-version=v1.0 MAAGTFLLVVALLISSAADMTVTAQSSSINGGATVPAVFVFGDSLVDTGNNNYIPITIAKSNFPPYGRDFTDGFPTGRFSNGRSVSDFIAQILGVKTLLP PYLDPTLELEQLLTGVSFASSGAGYDPRTSQLANAIQITEQLDFLGDYIKKMNASIGEERTASIISQSAYISVIGSNDVSNMYPLVQDFYDENSYTDRMI TLALDFYQQLYKLGARRIGLLTLPPTGCAPAIRILDGGPNRLCYESLNRRVRLFNSKLSLLVDKLNAELPGANFVLFDLYNPVISLIQNPAPYGFKEVSR GCCGTGNIEVAVLCVLPGTCPDASKYLFWDSYHPTERASGILVHQVLSPKLRKLVG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10028423 [exp]	0	1
AT1G47740			PPPDE putative thiol peptidase...		Lus10011291 [exp]	15.0	0.8621
AT5G15140			Galactose mutarotase-like supe...		Lus10005251 [exp]	23.6	0.8432
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10003888 [exp]	28.9	0.8211
AT5G43080		CYCA3;1	Cyclin A3;1 (.1)		Lus10013886 [exp]	30.2	0.8182
AT1G79650		AtAO1, RAD23B, ...	RADIATION SENSITIVE23B, Arabid...		Lus10026110 [exp]	39.3	0.7643
AT1G51940			protein kinase family protein ...		Lus10006841 [exp]	42.0	0.8063
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10000237 [exp]	43.5	0.7919
AT5G47540			Mo25 family protein (.1)		Lus10041405 [exp]	46.9	0.8142
AT3G59090			unknown protein		Lus10004930 [exp]	62.2	0.8193
AT4G32000			Protein kinase superfamily pro...		Lus10041026 [exp]	69.6	0.7907

Compare expression of checked genes

Lus10028423 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.