Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14820 293 / 9e-98 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20120 291 / 3e-96 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G42170 287 / 6e-95 SGNH hydrolase-type esterase superfamily protein (.1) AT1G20132 278 / 3e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75900 275 / 2e-90 EXL3 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G59406 274 / 4e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58725 274 / 4e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G04570 272 / 2e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75890 269 / 4e-88 EXL2 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT3G16370 267 / 2e-87 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028425 [exp] 516 / 1e-180 AT1G75900 333 / 8e-109 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028423 [exp] 455 / 4e-161 AT3G14820 317 / 7e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041877 [exp] 449 / 6e-159 AT3G14820 321 / 1e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10014257 [exp] 438 / 2e-150 AT3G14820 282 / 1e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10020010 [exp] 393 / 2e-132 AT2G19080 308 / 1e-99 metaxin-related (.1) Lus10003717 [exp] 309 / 1e-103 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10017279 [exp] 308 / 2e-103 AT3G14820 370 / 1e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 305 / 3e-102 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013573 [exp] 302 / 5e-101 AT3G14820 367 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G018800 [exp] 310 / 9e-104 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 309 / 1e-103 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.009G151000 [exp] 267 / 2e-87 AT5G22810 504 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G205100 [exp] 264 / 7e-86 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G191400 [exp] 261 / 5e-85 AT3G16370 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.006G118300 [exp] 258 / 5e-84 AT5G03820 478 / 2e-170 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.002G219700 [exp] 255 / 2e-82 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G062000 [exp] 254 / 4e-82 AT5G45960 440 / 8e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160100 [exp] 252 / 9e-82 AT2G04570 497 / 5e-178 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 252 / 1e-81 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10028424 pacid=23165996 polypeptide=Lus10028424 locus=Lus10028424.g ID=Lus10028424.BGIv1.0 annot-version=v1.0 ATGGCCAGTATCGTTCTTCTCGTGGGAAGCTTAATGTTACTACTCAGTTCAGCAGCTGCAGCTCACAGCAACGACACTGTGCCAGCAGTGTTTGTGTTTG GGGACTCTTTGGTTGATACAGGGAACAACAATTACATCCCAACCCTCATCCAGGCCAACTTCCCACCTAACGGCAGAGACTTCCCCGATCGAAAACCCAC CGGTAGGTTCAGCAATGGCAGATGCGTCTCTGACTTCATAGCTGAAGTCCTTGGTGTGAAAGGGATCCTGCCACCATACCTTGACCCTAGCTTGGACCTT CAAGAGCTACTTACTGGTGTCTGTTTCGCTTCTGCTGGCGCTGGTTACGACCCTCGCGAATCCCAATCAGCTAAGGCGATACCGATCATGGGACAGTTAG ACATGTTCAGAGAATACATCAGGAAGATGAATTCAAGTGTTGGTGAAGAAAGAACAAGATCCATCATATCAGAAAGTGCATACATGACTTTCCTAGGAAG CAACGACATCACAAACCCTATCCCCGGTGCTTCCTATGACGAAGATTCGCACACCGATCTACTCATCCGTTACGCCCTGCATTTCCATCAGCAACTCTAT CAACTTGGAGCAAGGAGAATCGGGTTGCTGAACTTACCTGCTACAGGTTGTGTGCCGGGATTGAGAGTTATCGAAGGAGGAATACCGAGAGAATGTTCAG AAAGGATCAACAGACGCATCAGGCTTTTCAACTCCAAGCTGAGTTTTGCAGTTGAAAAGATGAACAAGGACTTTCCTGGTGCAAGGGTTGTGCTCTTTGA CCTGTACAATCCTGTGCTTTCCCTCGTTCAAAATCCAGCTTCATATGGGATTGAAGAGGTTAAGTTTGGATGTTGTGGCACAGGGAATCTTGAGGCAGGA GTGTTCTGTGCTGTTCCAGGGACTTGCAGTGATGCTTCAAAGTACTTGTTCTGGGACAGCTTCCATCCCTCTGAAAAAGCAGCTAAAATCATGACGTATC AAGCTCTCGCTCCAAATTTGAGTAAACTGTTTTACTAA
AA sequence Show only first row Show all	>Lus10028424 pacid=23165996 polypeptide=Lus10028424 locus=Lus10028424.g ID=Lus10028424.BGIv1.0 annot-version=v1.0 MASIVLLVGSLMLLLSSAAAAHSNDTVPAVFVFGDSLVDTGNNNYIPTLIQANFPPNGRDFPDRKPTGRFSNGRCVSDFIAEVLGVKGILPPYLDPSLDL QELLTGVCFASAGAGYDPRESQSAKAIPIMGQLDMFREYIRKMNSSVGEERTRSIISESAYMTFLGSNDITNPIPGASYDEDSHTDLLIRYALHFHQQLY QLGARRIGLLNLPATGCVPGLRVIEGGIPRECSERINRRIRLFNSKLSFAVEKMNKDFPGARVVLFDLYNPVLSLVQNPASYGIEEVKFGCCGTGNLEAG VFCAVPGTCSDASKYLFWDSFHPSEKAAKIMTYQALAPNLSKLFY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10028424 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026236 [exp]	1.4	0.8622
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10036079 [exp]	1.4	0.8699
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036078 [exp]	4.9	0.8378
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10025922 [exp]	5.7	0.8270
AT4G05030			Copper transport protein famil...		Lus10039093 [exp]	6.5	0.7876
AT4G30320			CAP (Cysteine-rich secretory p...		Lus10019993 [exp]	7.4	0.8226
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026237 [exp]	9.5	0.8062
AT1G48130		ATPER1	1-cysteine peroxiredoxin 1 (.1...		Lus10018342 [exp]	9.9	0.7696
AT5G25120		CYP71B11	"ytochrome p450, family 71, su...		Lus10013194 [exp]	14.7	0.7677
AT4G37940	MADS	AGL21	AGAMOUS-like 21 (.1)		Lus10020477 [exp]	17.4	0.7848

Compare expression of checked genes

Lus10028424 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.