Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75900 304 / 2e-97 EXL3 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20120 298 / 1e-94 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75890 288 / 4e-91 EXL2 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G42170 287 / 9e-91 SGNH hydrolase-type esterase superfamily protein (.1) AT3G14820 281 / 6e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75880 268 / 2e-83 EXL1 SGNH hydrolase-type esterase superfamily protein (.1.2) AT1G59406 264 / 3e-82 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58725 264 / 3e-82 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20132 261 / 1e-80 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G03810 257 / 2e-79 GDSL-like Lipase/Acylhydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028424 [exp] 481 / 9e-167 AT3G14820 298 / 2e-99 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028423 [exp] 452 / 4e-155 AT3G14820 317 / 7e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041878 [exp] 453 / 2e-153 AT1G75900 279 / 7e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041877 [exp] 437 / 2e-149 AT3G14820 321 / 1e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10014257 [exp] 406 / 3e-133 AT3G14820 282 / 1e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10020010 [exp] 372 / 2e-119 AT2G19080 308 / 1e-99 metaxin-related (.1) Lus10034540 [exp] 325 / 1e-105 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 323 / 7e-105 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013572 [exp] 297 / 8e-95 AT1G75900 435 / 2e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G242800 [exp] 337 / 4e-110 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G018800 [exp] 336 / 2e-109 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.009G151000 [exp] 259 / 2e-80 AT5G22810 504 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G205100 [exp] 256 / 1e-78 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 253 / 7e-78 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G191400 [exp] 252 / 8e-78 AT3G16370 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.006G118300 [exp] 249 / 9e-77 AT5G03820 478 / 2e-170 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.014G160200 [exp] 247 / 6e-76 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G062000 [exp] 243 / 4e-74 AT5G45960 440 / 8e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 238 / 1e-72 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10028425 pacid=23166033 polypeptide=Lus10028425 locus=Lus10028425.g ID=Lus10028425.BGIv1.0 annot-version=v1.0 ATGATGAGGATCTTCTTGCATTGCGTGATCATGATCGTGGTTTCACAATCCAACAACATTGCAGCTAGTCCTCCACCACATAAAAAAGCACCAGCACTGT TGATCTTCGGTGACTCGATTTTGGATTCGGGCAACAACAACTACCTCAAGACCATAGTCAAATGCGACTTCCCTCCTTATGGGAGGGATTTCGTCACTAG GAAACCTAGTGGCAGGTTCTGCAATGGGAAAGTCCCCTCTGACTTTGCAGCCAGCTATATTGGGGTGAAGGACTTACTCCCGCCCTCTCTCGACCCGACT CTTACGCTTCATGACCTCGCTACCGGTGTCAGTTTCGCTTCTGGCGGCTCTGGTTACGATCCTGCAACACCCCATGGCGCGTCTGTTCTGTCTCTGTCGG ACCAGTTGGAGCTGTTTGAGGAGTACAAAGGCAAGTTGAGGAAAGGACTGGGGATAGAAAGAGCAGCAAACATTGTGTCTCAAAGTGCATACTTGATCGG AGTAGGGAGCGACGACTTAGTCAACACTTACTTCCCTTCCCCTATCAAAAGACTGCAGTACGACGTCGGATCGTACACCGATTTGATGGCCACCTATGCT TCAAGCTTCTACGAGGCTTGGAGCAAGAAGGATAGGGTTCTGAGCTTACCACCAGTAGGGTGCCTTCCATCACAAAGAACACTCGGAGGAGGAATCAACA GGAACTGCTCAGAGATGTATAACCAAGCAGCTCAGCTCTTCAACTCCAAGCTCTCCTCGCTCCTTCAATCCCTCGCCCACAAACATCCAGACGGACTGTT CCTCTACTTGGATGTCTACGACAGACTTACTTCCATGGTCCGAAATCCTGCCCAGTATGGATTCGAGGTTGTGGCGAAAGGGTGCTGTGGGACTGGGAAC ATAGAAGTGAGCATACTGTGTACTTCTTTAAGTGACCCACACACTTGTAAAGATGCTTCCAAGTATCTCTTCTGGGATAGCTACCATCCTTCTGAGAAAG GCTACTCTTTCCTTACCAAGATGGTCATGGACGATTTAGCTGCTGCAAGTAACAGTAGCCAAACTGTGCCAGCGGTATTTGTGTTTGGGGACTCTGTAGT TGACACAGGAAACAACAATTACATCCTCACCCTTGCAAAGAGCAACTTCCCACCTTACGGCAGAGACTTCCCTCCTGCTGGAGAACCAAACGGAAGGTTC AACAATGGCAAATGCGTCTCTGACTTCATAGCTCAAGTCCTTGGTGTAAAAGAGCTTCTGCCACCATATCTAGATCCACACTTGGACCTTCAACAGCTAC TTACAGGCGTGTGTTTCGCTTCTGGCGGTTCTGGTTACGACCCTCGCACATCCCAATTGACTACTGCAATACCAATCTTGAGGCAACTAGACATGCTAAC AGAGTACATCAGGAAGATCAATTCAAGTGTCGGGGAAGAAAGAACAAGATCCATTATATCAGAAAGTGCATACATAACTTTCCTGGGAAGCAATGATATT ACAAACCCTTTGCTTAGTAATTTGTATGATGAAGATTCACACACTGATCTCATCATTCATCAGGCTCTACACTTCTACAAGAAACTTTATGAAGTTGGAG CCAGAAGAATTGGGTTGTTGAGCTTACCTCCAACAGGGTGTGTGCCAGCCTTGAGAATTCTGGATGGAGGGTTTGAGAGAGTCTGTTCAGAAAGTGTCAA CAGACGAATCAGGCTTTTCAACTCCAAGCTGTCATTGGCTGTTGATAAGATGAATGAAGAGCTTCCAGGAGTCAAGATGGTTCTTTTTGACCTCTACAAT CCATTGCTTTCCCTCATACAAAACCCTGCTCCATATGGGATCGAAGAGGTTAAAAGAGGATGTTGTGGAACAGGGAATCTTGAGTTGGGTGTACTGTGTG CTATTCCAGGGACTTGTCCTGATGCTTCCAAGTATTTGTTCTGGGACACAGTCCATCCAACTGATAAAGCATCTAAAATCCTGACATATCAAGCTCTTAC TCCAAATTTGAGTGAACTTTTCTGA
AA sequence Show only first row Show all	>Lus10028425 pacid=23166033 polypeptide=Lus10028425 locus=Lus10028425.g ID=Lus10028425.BGIv1.0 annot-version=v1.0 MMRIFLHCVIMIVVSQSNNIAASPPPHKKAPALLIFGDSILDSGNNNYLKTIVKCDFPPYGRDFVTRKPSGRFCNGKVPSDFAASYIGVKDLLPPSLDPT LTLHDLATGVSFASGGSGYDPATPHGASVLSLSDQLELFEEYKGKLRKGLGIERAANIVSQSAYLIGVGSDDLVNTYFPSPIKRLQYDVGSYTDLMATYA SSFYEAWSKKDRVLSLPPVGCLPSQRTLGGGINRNCSEMYNQAAQLFNSKLSSLLQSLAHKHPDGLFLYLDVYDRLTSMVRNPAQYGFEVVAKGCCGTGN IEVSILCTSLSDPHTCKDASKYLFWDSYHPSEKGYSFLTKMVMDDLAAASNSSQTVPAVFVFGDSVVDTGNNNYILTLAKSNFPPYGRDFPPAGEPNGRF NNGKCVSDFIAQVLGVKELLPPYLDPHLDLQQLLTGVCFASGGSGYDPRTSQLTTAIPILRQLDMLTEYIRKINSSVGEERTRSIISESAYITFLGSNDI TNPLLSNLYDEDSHTDLIIHQALHFYKKLYEVGARRIGLLSLPPTGCVPALRILDGGFERVCSESVNRRIRLFNSKLSLAVDKMNEELPGVKMVLFDLYN PLLSLIQNPAPYGIEEVKRGCCGTGNLELGVLCAIPGTCPDASKYLFWDTVHPTDKASKILTYQALTPNLSELF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10028425 [exp]	0	1
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Lus10039643 [exp]	1.7	0.9332
					Lus10026628 [exp]	3.9	0.9211
AT2G27660			Cysteine/Histidine-rich C1 dom...		Lus10021061 [exp]	4.5	0.8951
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Lus10039216 [exp]	4.5	0.9230
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10002500 [exp]	4.6	0.8804
AT1G12480		SLAC1, RCD3, CD...	SLOW ANION CHANNEL-ASSOCIATED ...		Lus10006678 [exp]	5.0	0.9123
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10038857 [exp]	5.7	0.9130
AT1G08810	MYB	ATMYB60	myb domain protein 60 (.1.2)		Lus10009522 [exp]	6.7	0.9040
					Lus10037540 [exp]	7.2	0.8898
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10041878 [exp]	7.3	0.9096

Compare expression of checked genes

Lus10028425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.