Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17790 1269 / 0 ZIP3, VPS35A ZIG suppressor 3, VPS35 homolog A (.1) AT1G75850 1211 / 0 VPS35B VPS35 homolog B (.1) AT3G51310 1146 / 0 VPS35C VPS35 homolog C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041880 [exp] 1588 / 0 AT2G17790 1261 / 0.0 ZIG suppressor 3, VPS35 homolog A (.1) Lus10013565 [exp] 1217 / 0 AT1G75850 1306 / 0.0 VPS35 homolog B (.1) Lus10017272 [exp] 1213 / 0 AT1G75850 1304 / 0.0 VPS35 homolog B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G110600 [exp] 1411 / 0 AT2G17790 1249 / 0.0 ZIG suppressor 3, VPS35 homolog A (.1) Potri.002G019400 [exp] 1246 / 0 AT1G75850 1271 / 0.0 VPS35 homolog B (.1) Potri.005G242100 [exp] 1228 / 0 AT1G75850 1309 / 0.0 VPS35 homolog B (.1) Potri.007G061520 [exp] 122 / 4e-33 AT1G75850 119 / 8e-33 VPS35 homolog B (.1) Potri.007G061540 [exp] 0 / 1 AT2G17790 0 / 1 ZIG suppressor 3, VPS35 homolog A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03635 [flax] [poplar] Vps35 Vacuolar protein sorting-associated protein 35
Representative CDS sequence Show only first row Show all	>Lus10028427 pacid=23165997 polypeptide=Lus10028427 locus=Lus10028427.g ID=Lus10028427.BGIv1.0 annot-version=v1.0 ATGATCGCCGATGGCGTCGAAGACGAAGAAAAATGGCTGGCGGCAGGGATCGCTGGCCTGCAGCAGAATGCCTATCACATGCACCGTGCTCTGGATACGA ACAATCTCAGAGATGCTTTGAAGTACTCGGCGCAGATGCTTTCCGAGCTCCGTACTTCCAAGCTTTCCCCTCACAAGTACTATACACTATACATGCGTGC GTTTGATGAACTGAGGAACCTCGAGATGTTCTTTAAGGAAGAAACCCGCCGTGGGTTCTCGATCGTTGAGCTCTATGAACTTGTGCAGCATGCTGGTAAC ATATTGCCTAGACTGTATCTCTTATGCACTGTGGGATCTGTGTACATCAAATCTAAAGAAGCTCCAGCCAAGGATGTCCTTAAGGATCTAGTGGAAATGT GCCGTGGCATTCAACATCCTGTACGTGGGCTCTTTCTAAGGAGTTACCTTTCTCAAATCAGCAGGGATAAATTAACTGATATAGGTTCTGAAGATGAAGG AGATGCTGATACGGTTGTGGACGCTGTTGAGTTTTTGCTCCAAAATTTCACAGAGATGAACAAGCTATGGGTGCGGATGCATCATCAGGGACCTGCCCGT GAAAGGGAGAGGCGGGAGAAAGAAAGGAACGAGCTTCGGGATCTTGTTGGGAAGAACTTGCACGTCCTTAGTCAGATAGACGGTGTTGACCTTGATATGT ACAGAGACACAGTGCTTCCCAGAGTCCTTGAACAGGTTGTAAACTGTAAGGACGAGATCGCTCAGTTCTATCTCATGGATTGCATCATTCAAGTCTTTTC TGATGAGCATCATTTACAAACTCTAGAAGTTCTACTTGGTGCTTGCCCCCAGCTCCAGTCATCCGTTGATATAATGACAGTGTTGTCTAGATTGATGGAA AGGCTATCTAATTATGCTGCCTCCAGCTCTGAAGTTTTGCCCGAGTTCTTGCAAGTTGAAGCCTTTTCCAAGTTAAACAATGCTATAGGAAAGGTGATTG AAGCACAGCCAGATATGCCGATATTTGGAGCTGTTACATTATATTCATCTCTTCTTAAATTTACGCTTCATGTTCACCCAGACAGACTGGATTATTCTGA TCAAGTTTTGGGTGCCTGTTATAAGAAACTGCAGAGCGTGGGAAAGGTTGAAGACAGCAAAGCAACAAAGCAAATTGTGGCACTTTTGAGTGCACCATTA GAGAAATATAACGATATTGTCACTGCTTTGAAGCTTTCCAATTATCCTCGTGTAATGGAGTATCTAGACTCTGAAACAAGTAAAATCATGGCAACTGTTA TCATTCAAAGTATTATGAAGAATAGCACACACATTTCTAGTGCTGACAAGGTTGAGGCATTGTTTGAATTGATTAAAGGGCTTATGAAGGATTTGGACGA TGCCACTGCAGAGGTTGATGAAGATGATTTTAAGGAGGAGCAGAATTCTGTTGCACGTCTTATTCAGATGTTGGTTAATGATGACCCAGAGGAGATGTTC AAGATCATATGCGTCGTGAGGAAGCATATAATGAATGGAGGGCCAAAGCGTCTACCATTTACCATTCCTCCCTTTGTCTTCTCTTCCTTGAAGTTGGTTA GGCAGTTACAAGGGCAAGATGAGAATCCCTTTGGTGAAGAGGCGACAACGCCAAAAACAATTTTTCAGCTTTTGAATCAGACTATTGAGGTTCTGCCGAC TATCCCAGCACCTGAACTGGCATTAAGATTGTACCTAGAATGTGCAGAGGCTGCAAATGACTCTGATTTGGAGCCTGTTGCATACGACTTTTTCACCCAA GCTTATATTCTATACGAGGAGGAAATATCAGATTCCAAAGCGCAGGTGACTGCTTTACATCTAATAATAGGGACTCTTCAGAGGATGCATGTTTTTGGTG TTGAGAACCGTGATACCTTGACGCATAAGGCTACTGGGTATTCCGCTAAGCTTTTAAAGAAACCTGATCAATGTAGGGCCGTGTATGGGTGTGCCCATCT TTTCTGGGTTGATGATCAGGATAACATGAAAGATGGCGAGAGGGTATTAATATGCCTAAAGCGTGCTTTAAGAATAGCTAATGCTGCTCAACAAATGTCT AATGCTGCACGAGGTAGCACAGGGTCGGTCACTCTCTTCATCGAGATTCTAAACAAGTATCTCTACTTCTATGAGAAGGGAAATCAGCACATTACAGTCG ATGCAGTCAATAGCCTAATTGAACTGATCACGACTGAGATGCCAAATGATGCTGGGTCGGGTGCACCAGATCCAGCGGCAGAGGCTTACTTTGCGAGCAC GCTACAGTACATCCAGTTCCAGAAACAGAAAGGCGGAGTAATTGGTGAAAGATACGAAGCTCTCAGCACCGCAGTCAAAGAATAG
AA sequence Show only first row Show all	>Lus10028427 pacid=23165997 polypeptide=Lus10028427 locus=Lus10028427.g ID=Lus10028427.BGIv1.0 annot-version=v1.0 MIADGVEDEEKWLAAGIAGLQQNAYHMHRALDTNNLRDALKYSAQMLSELRTSKLSPHKYYTLYMRAFDELRNLEMFFKEETRRGFSIVELYELVQHAGN ILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLTDIGSEDEGDADTVVDAVEFLLQNFTEMNKLWVRMHHQGPAR ERERREKERNELRDLVGKNLHVLSQIDGVDLDMYRDTVLPRVLEQVVNCKDEIAQFYLMDCIIQVFSDEHHLQTLEVLLGACPQLQSSVDIMTVLSRLME RLSNYAASSSEVLPEFLQVEAFSKLNNAIGKVIEAQPDMPIFGAVTLYSSLLKFTLHVHPDRLDYSDQVLGACYKKLQSVGKVEDSKATKQIVALLSAPL EKYNDIVTALKLSNYPRVMEYLDSETSKIMATVIIQSIMKNSTHISSADKVEALFELIKGLMKDLDDATAEVDEDDFKEEQNSVARLIQMLVNDDPEEMF KIICVVRKHIMNGGPKRLPFTIPPFVFSSLKLVRQLQGQDENPFGEEATTPKTIFQLLNQTIEVLPTIPAPELALRLYLECAEAANDSDLEPVAYDFFTQ AYILYEEEISDSKAQVTALHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYGCAHLFWVDDQDNMKDGERVLICLKRALRIANAAQQMS NAARGSTGSVTLFIEILNKYLYFYEKGNQHITVDAVNSLIELITTEMPNDAGSGAPDPAAEAYFASTLQYIQFQKQKGGVIGERYEALSTAVKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Lus10028427 [exp]	0	1
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10039855 [exp]	2.8	0.8496
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10041425 [exp]	3.3	0.8506
AT1G73660			protein tyrosine kinase family...		Lus10031341 [exp]	4.6	0.8441
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Lus10041880 [exp]	4.9	0.8353
AT3G57890			Tubulin binding cofactor C dom...		Lus10021031 [exp]	6.9	0.8393
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Lus10029025 [exp]	9.9	0.8275
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Lus10040387 [exp]	10.4	0.7862
AT1G10050			glycosyl hydrolase family 10 p...		Lus10011465 [exp]	12.0	0.8271
AT4G01210			glycosyl transferase family 1 ...		Lus10002154 [exp]	16.2	0.7827
AT2G41150			unknown protein		Lus10018111 [exp]	16.9	0.7479

Compare expression of checked genes

Lus10028427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.