Plant FIBer expression Database

Lus10028429 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G66120 631 / 0 3-dehydroquinate synthase, putative (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041882
[exp]
750 / 0 AT5G66120 604 / 0.0 3-dehydroquinate synthase, putative (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G110900
[exp]
652 / 0 AT5G66120 624 / 0.0 3-dehydroquinate synthase, putative (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0224 DHQS PF01761 DHQ_synthase 3-dehydroquinate synthase
Representative CDS sequence
>Lus10028429 pacid=23166148 polypeptide=Lus10028429 locus=Lus10028429.g ID=Lus10028429.BGIv1.0 annot-version=v1.0
ATGGCTTCCACAGCCACCGCCATCTCCCTCTCCCTCACCACCGCCGCCCGCAGGGACAGCCGCTCGCCGGATTCCTGTCTAAGATTTCCCAAGCCCAACG
CCGTCTCCCTACGTTTGAGACCGACTGGAGCATCGCTGTCAACTTGCTGTTCAATCAGGTCTAGCAGGATTTGCGCCACTTCTGCTCCTGCTATGGACCA
GTCGCTCAACGAAACTGGTGCTAATGCGCCTACGGTTGTCGATGTCAATTTGGGGAACCGGAGCTACCCGATCTACATCGGTTCCGGGCTTCTTAATCAA
CCCGAGCTTCTTCAAAGGCATGTCCACGGGAAGAGGGTACTTGTTGTGACTAATGAAACGGTAGCTCCGCTATATTTGGATAGAGTCGTTGAGGCATTGA
CACGAGGGAATCCAAATGTGTCTGTTGAGAGTGTAATTTTGCCTGATGGTGAGAAGTATAAGAACATGGATGTTCTGATGAAAGTATTCGATAAGGCCAT
GGAGACACGGTTGGATAGGAAATCTACATTTGTTGCTTTAGGAGGAGGAGTAATTGGTGACATGTGTGGATTTGCAGCTGCTGCTTACTTGCGGGGTGTT
AATTTTATTCAGATCCCCACAACTCTTATGGCACAGGTAGATTCTTCGGTTGGAGGCAAAACTGGTATAAACCACCCACTTGGGAAGAACATGATTGGCG
CATTTTACCAGCCCCAGTGTGTTCTGATAGATACTGATACCCTGAATACGTTGTCGGAGAGGGAACTCGCATCGGGTGTTGGTGAGGTTGTGAAGTATGG
GCTGATTCGTGATGCTGAATTCTTCGAGTGGATGGAGAAGAATATTGAATTACTGTTGTCGAGTGAACTGCTTCATGCTAGTAGTGTGGGTCTATTTATG
AATGGTGCCCTAAGCTTATTTTCCCAATTTTGGGGGGATGGACACTGCAGAGATCCCAATGCTTTAGCTTATGCCATCAAACGCTCATGTGAAAACAAGG
CCGAGATCGTGTCCCTAGATGAGAAAGAAAGTGGACTGCGGGCAACTTTGAACTTAGGTCACACATTTGGCCATGCAATAGAAACTGGGTTCGGATATGG
GCAGTGGTTCCATGGAGAAGCTGTGTCAGCTGGCATGGTAATGGCTGCTGACATGTCATACCGACTTGGCTGGATTGACGATTCCCTCGTAAAGCGAGTA
TACAAAATTCTAGAGCAGGCTAAGCTACCTGTTAGTCCACCAGAAACAATGACCGTAGACATGTTTCGATCCATCATGGCCGTTGATAAGAAGGTTGCGG
ATGGGGTGCTAAGGCTAATCCTCCTCAAAGGTCCTCTTGGTAACTGTGTGTTTACCGCAGATTACGACAGAAAAGCACTTGAGGATACACTGCAGGCGTT
TTGCAAATCATGA
AA sequence
>Lus10028429 pacid=23166148 polypeptide=Lus10028429 locus=Lus10028429.g ID=Lus10028429.BGIv1.0 annot-version=v1.0
MASTATAISLSLTTAARRDSRSPDSCLRFPKPNAVSLRLRPTGASLSTCCSIRSSRICATSAPAMDQSLNETGANAPTVVDVNLGNRSYPIYIGSGLLNQ
PELLQRHVHGKRVLVVTNETVAPLYLDRVVEALTRGNPNVSVESVILPDGEKYKNMDVLMKVFDKAMETRLDRKSTFVALGGGVIGDMCGFAAAAYLRGV
NFIQIPTTLMAQVDSSVGGKTGINHPLGKNMIGAFYQPQCVLIDTDTLNTLSERELASGVGEVVKYGLIRDAEFFEWMEKNIELLLSSELLHASSVGLFM
NGALSLFSQFWGDGHCRDPNALAYAIKRSCENKAEIVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWFHGEAVSAGMVMAADMSYRLGWIDDSLVKRV
YKILEQAKLPVSPPETMTVDMFRSIMAVDKKVADGVLRLILLKGPLGNCVFTADYDRKALEDTLQAFCKS

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G66120 3-dehydroquinate synthase, put... Lus10028429
[exp]
0 1
AT1G17620 Late embryogenesis abundant (L... Lus10015622
[exp]
1.4 0.9734
AT1G60810 ACLA-2 ATP-citrate lyase A-2 (.1) Lus10030592
[exp]
3.5 0.9722
AT5G44030 IRX5, NWS2, CES... IRREGULAR XYLEM 5, cellulose s... Lus10008226
[exp]
6.7 0.9706
AT4G08810 SUB1 calcium ion binding (.1) Lus10039175
[exp]
7.5 0.9551
AT5G07990 CYP75B1, D501, ... TRANSPARENT TESTA 7, CYTOCHROM... Lus10008112
[exp]
7.7 0.9640
AT1G25370 Protein of unknown function (D... Lus10035144
[exp]
8.5 0.9380
AT2G38360 PRA1.B4 prenylated RAB acceptor 1.B4 (... Lus10022680
[exp]
11.4 0.9594
AT2G36880 MAT3 methionine adenosyltransferase... Lus10013828
[exp]
14.7 0.9617
AT2G03550 alpha/beta-Hydrolases superfam... Lus10019885
[exp]
15.2 0.9614
AT5G16490 RIC4 ROP-interactive CRIB motif-con... Lus10036433
[exp]
15.5 0.9634

Lus10028429 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.