Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66130 525 / 0 ATRAD17 RADIATION SENSITIVE 17 (.1) AT1G77620 54 / 4e-07 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041883 [exp] 130 / 1e-35 AT5G66130 63 / 3e-12 RADIATION SENSITIVE 17 (.1) Lus10035108 [exp] 45 / 0.0002 AT1G77620 536 / 4e-171 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018144 [exp] 43 / 0.0005 AT1G77470 564 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10025689 [exp] 42 / 0.001 AT1G77470 568 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G111000 [exp] 669 / 0 AT5G66130 607 / 0.0 RADIATION SENSITIVE 17 (.1) Potri.005G177000 [exp] 49 / 7e-06 AT1G77620 642 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G084700 [exp] 45 / 0.0001 AT1G77620 634 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF03215 [flax] [poplar] Rad17 Rad17 P-loop domain
Representative CDS sequence Show only first row Show all	>Lus10028430 pacid=23166052 polypeptide=Lus10028430 locus=Lus10028430.g ID=Lus10028430.BGIv1.0 annot-version=v1.0 ATGGGGAAAAGAAGTAATGTTGTGGTTATATCATCAGAGGATGACGAAGACTATGGCATGCCGTCAAGTAGGAGGAATCAGAGCTGCGAGAAACGGAAGC CTAAGCAGAAGTTGCTCACTCGTTCTAGTAGGAAGAACATTAAGGATCTATGGGTAGATAAGTATGCACCTCGTAAGTTAGAAGATCTTGCTGTGCACAA GAAGAAGGTTGAAGAAGTTCAGCAATGGTTTGAGGAAAGAATGAACTCTGAGAAGGGCAGTTCTGCGAGTAATGTTCTAATCATAACAGGACCAGCAGGG GTCGGGAAGTCTGCAACCATCCACATCCTTGCGTCTCATTTTGGAGCTAGATTGTACGAGTGGAACACGCCTATTCCAACAACATGGCTTGAGCATCTGC ATAGTGCTGATACAGGAATCCATTACACTTCCAAGCTGGATGAGTTTGTTACCTTTGTTGAGAAAGTAAGGAAGTACGGTTTACTTCCTACATCCATGTG CACAATGCTAAAAGAATCATTTGTACTCTTGATCGACGATCTTCCTTTGGTTAATGGGAGAGTTCCTTTCGAGAGACTTAAAAACTGCTTGCTTCTTCTC ACAAGATCAGCTCAGGTACCAACTATTATAGTGTTATCTGACAGCGGCAAAGCAGATTCAGCAGACCAAGCTTTCCGATCCTTGGAAGAACTTCAGAATT CTGTTGAAAGTGCTGGAGCTTGTAAGGTTGCTTTCAACCCTATTACTCATAGCTCAATGAAGAAGGCGTTAAGCAGAATATGCCTCCAGGAGTACTGTAA TAATGTATCCGCGGAGCAGATTGATCTGATAGCAAAAGCTAGTGGCGGTGATATTAGACATGCAATTACGTCTTTGCAGCTCTTCTGTGTTAAGTCGGAT CGAAAGGCAATTGTGTCACTGCCCAGTGCCAATTTGAGTTTCTCAGATTTGAAGGCAGGTGATATTGACGATTTGGTCAGTGGGGTTTCTTTACTCTTCG GTAAAGATGAAACTCTTTCTTTATTTCATGCCCTGGGGAAGTTCCTGCATAACAAAAGAGAAGCTGAAGTTCATGTTGCATTGGACCGAGACACATATCT TGTACGGGAAAAGTTCTACAGGTTTCCATTGCAAATGGAAGCTCCAGAAAAGGTTCTCTGTCAAGCACATGGTCAAGCAAGACCAATTGCTGATTTTCTT CACGAAAACATTTTAGATTTCATAAGTGACGAAGCAATGGATGATGCCTCGGATGTTGCTGCTTATTTAAGTGATGCAGACATGCTCCTTTCTTCCTTCC GAGGACAGCTGGCCAGATATAACGAGGCAGAAAATGTTCTTCAGTCAGCTGCAGCATCAGTTGCTTGCCGTGGTGTGTTATTTGGGAATGCTCATCCTTC ACCTCGCAGGTGGCATTCCATCCGAAAGCCAAAGCTCTGGCAGGTGGATCGTTCTAACCTGGACAATAAAAGAAAGATCGAAACACAGAGATATACGGCA TATGGTGGATGCAGCTCCTTGGATATGACGAATTTGGCTACCGAGTTCACAAGCATGTTAAGATTACAAGGGCATAGAGCACCTCACAATGGATCAAATC AGCGTACTGAGACGATGAACCCCGATGAATCAAGTGAGAGATCCGAGGATGAAATTGAAGATTTCAGCGAGTCGGATTGA
AA sequence Show only first row Show all	>Lus10028430 pacid=23166052 polypeptide=Lus10028430 locus=Lus10028430.g ID=Lus10028430.BGIv1.0 annot-version=v1.0 MGKRSNVVVISSEDDEDYGMPSSRRNQSCEKRKPKQKLLTRSSRKNIKDLWVDKYAPRKLEDLAVHKKKVEEVQQWFEERMNSEKGSSASNVLIITGPAG VGKSATIHILASHFGARLYEWNTPIPTTWLEHLHSADTGIHYTSKLDEFVTFVEKVRKYGLLPTSMCTMLKESFVLLIDDLPLVNGRVPFERLKNCLLLL TRSAQVPTIIVLSDSGKADSADQAFRSLEELQNSVESAGACKVAFNPITHSSMKKALSRICLQEYCNNVSAEQIDLIAKASGGDIRHAITSLQLFCVKSD RKAIVSLPSANLSFSDLKAGDIDDLVSGVSLLFGKDETLSLFHALGKFLHNKREAEVHVALDRDTYLVREKFYRFPLQMEAPEKVLCQAHGQARPIADFL HENILDFISDEAMDDASDVAAYLSDADMLLSSFRGQLARYNEAENVLQSAAASVACRGVLFGNAHPSPRRWHSIRKPKLWQVDRSNLDNKRKIETQRYTA YGGCSSLDMTNLATEFTSMLRLQGHRAPHNGSNQRTETMNPDESSERSEDEIEDFSESD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66130		ATRAD17	RADIATION SENSITIVE 17 (.1)		Lus10028430 [exp]	0	1
AT5G06780		AtEML2, ACK4	EMSY-like 2, Emsy N Terminus (...		Lus10021038 [exp]	1.0	0.8846
AT5G26770			unknown protein		Lus10031444 [exp]	2.0	0.8622
AT3G13170		ATSPO11-1	Spo11/DNA topoisomerase VI, su...		Lus10016612 [exp]	4.0	0.8315
AT5G10110			unknown protein		Lus10022498 [exp]	4.5	0.8523
AT1G16570			UDP-Glycosyltransferase superf...		Lus10026065 [exp]	4.5	0.8401
AT4G23440			Disease resistance protein (TI...		Lus10032275 [exp]	4.6	0.8429
AT5G17370			Transducin/WD40 repeat-like su...		Lus10001227 [exp]	6.7	0.8322
AT1G09010			glycoside hydrolase family 2 p...		Lus10000159 [exp]	9.4	0.8396
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10002905 [exp]	9.9	0.8416
AT4G12740			HhH-GPD base excision DNA repa...		Lus10043074 [exp]	10.5	0.8578

Compare expression of checked genes

Lus10028430 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.