Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51290 587 / 0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT1G02110 309 / 1e-95 Protein of unknown function (DUF630 and DUF632) (.1) AT3G60320 276 / 2e-82 Protein of unknown function (DUF630 and DUF632) (.1) AT2G34670 236 / 2e-68 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT5G25590 181 / 3e-48 Protein of unknown function (DUF630 and DUF632) (.1) AT1G52320 159 / 4e-42 unknown protein AT1G21740 163 / 5e-42 Protein of unknown function (DUF630 and DUF632) (.1) AT1G77500 148 / 5e-37 Protein of unknown function (DUF630 and DUF632) (.1) AT4G35240 129 / 5e-31 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT2G17110 123 / 5e-29 Protein of unknown function (DUF630 and DUF632) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041884 [exp] 814 / 0 AT3G51290 649 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10042910 [exp] 264 / 1e-79 AT3G60320 727 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10036155 [exp] 257 / 3e-76 AT2G34670 516 / 3e-175 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10028207 [exp] 231 / 3e-68 AT3G60320 570 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10024007 [exp] 190 / 2e-51 AT1G21740 238 / 1e-66 Protein of unknown function (DUF630 and DUF632) (.1) Lus10041885 [exp] 174 / 3e-51 AT3G51290 91 / 5e-22 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10025077 [exp] 186 / 8e-50 AT4G35240 237 / 3e-66 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10022116 [exp] 183 / 3e-49 AT5G25590 753 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10025777 [exp] 182 / 5e-49 AT1G52320 652 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G112300 [exp] 664 / 0 AT3G51290 576 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.007G056700 [exp] 658 / 0 AT3G51290 545 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.014G047400 [exp] 323 / 3e-100 AT3G60320 862 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.002G137600 [exp] 316 / 2e-97 AT3G60320 699 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G137500 [exp] 201 / 2e-55 AT3G51290 228 / 4e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.005G108400 [exp] 199 / 8e-55 AT1G21740 231 / 4e-64 Protein of unknown function (DUF630 and DUF632) (.1) Potri.004G177200 [exp] 195 / 2e-53 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1) Potri.001G181100 [exp] 193 / 8e-53 AT1G52320 615 / 0.0 unknown protein Potri.003G054800 [exp] 186 / 2e-50 AT1G52320 626 / 0.0 unknown protein Potri.006G244100 [exp] 185 / 1e-49 AT5G25590 603 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [flax] [poplar] DUF632 Protein of unknown function (DUF632) PF04783 [flax] [poplar] DUF630 Protein of unknown function (DUF630)
Representative CDS sequence Show only first row Show all	>Lus10028431 pacid=23166156 polypeptide=Lus10028431 locus=Lus10028431.g ID=Lus10028431.BGIv1.0 annot-version=v1.0 ATGGGTTGCTTTTATTCGAGAATTGAGAGGGAGGAAATGGTGTCTAGATGCAAAGCCAGGAAGAAATACATGAAGCAGCTCGTTGAAGCTCGCCAATTCA TGGCGAGTTCCCATGTAATGTACCTTCGTTCACTCCGCAGCACTGGATCAGCTCTAATCCACTTCTCCAACATCGAAACCAGCCTCCACCACCACCAGTT GCAGAGCCGCCGCAATTACACTCACAACCACCACCACCACCTCCCGCCTACGATGCCCTCTCCGTCTCCGGGTCTTCCGCCAGTTCCTCCGCCTCCGCCG CCGATGAGCCCCAGCTCCGACACCACCTGGACGTCAATCTCCGCCTCCCCTCTTCCCCCGCCTCCGCCGCCGGCGTCGCAGACTTCCAGCTGGGATTTCT GGGACCCGTTCGCCCCTCAGCCGCCGTCTGCAACAAGGACGGAGGAGGAGTGGGAGGAGGTGACCACAATGACGGTGTCTGAAGCCCGCGCCGCCGCCAG TGCTAGCATTACGGCTCCGGCGGGTGTTGTCAGTGGGTTGACGACGGCGAGCGGCGGAAGCGGGAGTGAGCTGGCGATGGTGGTTTCAAGGAACAGTAAA GATCTAGTGGAGATAGTGAAGGAAGTGGATGAGTATTTTCTTAAAGCAGCTGATGGTGGAGCCCAACTTTCTCTGCTGCTTGAAGTTCCAACTTCTGGCT TCTCCTCCGCGGCTCAAGTCAAAGGAGGTAAAGTTTATAACTATGGCTGCAATTTGACAAGTCCGTCTTCATGGTCATGGAGTTCAAGTGGGATTATGGG GAAAATGGCTGAAGAAATTGTGGTTAGCACCAGCAACATTAATGGAGGAGGATCATTCAGTCATTGTTCAACTGTGGAGAGGATGTATGCTTGGGAGAAG AAACTGTTTCAGGAGGTTAAGAACGCCGAGAGCATAAAGATGGAACATGAGAAGAAGGTGGGACTGTTTAGGAAGCTGGAGATGAAGAGAGCTGATTATC TAAAGACTGAGAAAACAAAGAAGGAAGTTGAGAAATTGGAGTCCCAAATGATGGTAGCTTCACAAGCCATTGAATCCACCTCTTCTGAGATTATCAAATT GAGAGAATCTGAGCTCTACCCTCAGCTCCTTGAGCTAGTTAAAGGGCTGATGTGCATGTGGAGGAGCATGTACGAGTCCCACCAGGTCCATACTCACATC GTACAACAGCTCAAATACCTCAACACAATCCCATCGACCGAGCCAACTTCCGAGATTCACAGGCAATCGACTCTTCAGCTAGAGCTCCAAGTCCAACAAT GGCACCAATCCTTCTGTAACTTGGTAAAATCGCAACGCGACTACATCCAGTCTTTGACAAGCTGGCTCCGGCTGAGTCTATTCCAGTTTAGCAAAAGTCC GCTCTCCAAAACCATTCAGGATTCCAAGATTTACTCCCTCTGCGACGAGTGGCTCCACGCCATCGATCGAATGCCGGACAAAGTTGCTTCCGAAGGCATC AAGAGCTTCTTGACTGTAATCCATGCGATAGTGGTCCAGCAAGGGGAAGAGCATAAGCAAAAGAAGAAGGTGGACTCTGCATTGAAGGAGTTTGAGAAGA AGGCAGCCGAGCTAAGGTCGCTGGAGACCAAGTATGGACCGTATTCGATTCCAGAAAGTTCTTCAGGTAGCATTAGCAGAAGCAAGAACCCGGTTACGGA GAAGCGGGCGAAAGTGGAGGTCTTGAGAGCTCGAGCTGAAGAGGAAAAGACAAAGCACGAGAAGTCGGTAAGCATCACGAGAGCAATGACGTTGAACAAT CTGCAGATGGGATTCCCGCACGTGTTTCAGGCGATTGTCGGGTTTTCGAGTGTCTGTATGCATGCTTTTGAGTCCGTATACAACCAAGCCAAAAGCGCTG GGGAAGAGCATGAAGTAAAGAGAATAATGAGCTAG
AA sequence Show only first row Show all	>Lus10028431 pacid=23166156 polypeptide=Lus10028431 locus=Lus10028431.g ID=Lus10028431.BGIv1.0 annot-version=v1.0 MGCFYSRIEREEMVSRCKARKKYMKQLVEARQFMASSHVMYLRSLRSTGSALIHFSNIETSLHHHQLQSRRNYTHNHHHHLPPTMPSPSPGLPPVPPPPP PMSPSSDTTWTSISASPLPPPPPPASQTSSWDFWDPFAPQPPSATRTEEEWEEVTTMTVSEARAAASASITAPAGVVSGLTTASGGSGSELAMVVSRNSK DLVEIVKEVDEYFLKAADGGAQLSLLLEVPTSGFSSAAQVKGGKVYNYGCNLTSPSSWSWSSSGIMGKMAEEIVVSTSNINGGGSFSHCSTVERMYAWEK KLFQEVKNAESIKMEHEKKVGLFRKLEMKRADYLKTEKTKKEVEKLESQMMVASQAIESTSSEIIKLRESELYPQLLELVKGLMCMWRSMYESHQVHTHI VQQLKYLNTIPSTEPTSEIHRQSTLQLELQVQQWHQSFCNLVKSQRDYIQSLTSWLRLSLFQFSKSPLSKTIQDSKIYSLCDEWLHAIDRMPDKVASEGI KSFLTVIHAIVVQQGEEHKQKKKVDSALKEFEKKAAELRSLETKYGPYSIPESSSGSISRSKNPVTEKRAKVEVLRARAEEEKTKHEKSVSITRAMTLNN LQMGFPHVFQAIVGFSSVCMHAFESVYNQAKSAGEEHEVKRIMS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51290			Protein of unknown function (D...		Lus10028431 [exp]	0	1
AT3G51290			Protein of unknown function (D...		Lus10041884 [exp]	1.0	0.9625
AT5G12360			unknown protein		Lus10039048 [exp]	2.4	0.9623
AT3G57060			binding (.1.2)		Lus10039012 [exp]	3.0	0.9526
AT1G71760			unknown protein		Lus10030260 [exp]	3.5	0.9502
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Lus10011559 [exp]	3.9	0.9487
AT4G31880			unknown protein		Lus10017121 [exp]	5.3	0.9379
AT3G01710			TPX2 (targeting protein for Xk...		Lus10032115 [exp]	6.5	0.9448
AT4G28950		ATRAC7, ARAC7, ...	Arabidopsis RAC-like 7, RHO-re...		Lus10034932 [exp]	6.7	0.9203
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Lus10019275 [exp]	6.8	0.9323
AT1G63640			P-loop nucleoside triphosphate...		Lus10032264 [exp]	8.0	0.9400

Compare expression of checked genes

Lus10028431 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.