Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51280 546 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48850 283 / 3e-92 ATSDI1 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G04770 280 / 2e-91 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G20900 255 / 7e-80 TDM1, MS5 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G44330 223 / 2e-67 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G22794 82 / 1e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041886 [exp] 879 / 0 AT3G51280 566 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041887 [exp] 810 / 0 AT3G51280 572 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028434 [exp] 756 / 0 AT3G51280 560 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011872 [exp] 284 / 5e-93 AT5G48850 392 / 2e-138 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000753 [exp] 271 / 7e-88 AT1G04770 391 / 2e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023256 [exp] 279 / 8e-88 AT4G20900 330 / 4e-108 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011738 [exp] 267 / 5e-86 AT1G04770 389 / 1e-136 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022806 [exp] 281 / 1e-85 AT5G05740 644 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3) Lus10008852 [exp] 270 / 2e-84 AT4G20900 311 / 7e-101 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G112100 [exp] 646 / 0 AT3G51280 595 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G056500 [exp] 633 / 0 AT3G51280 603 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G177600 [exp] 301 / 1e-99 AT1G04770 384 / 8e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G050600 [exp] 287 / 2e-94 AT1G04770 381 / 6e-134 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G240700 [exp] 286 / 1e-93 AT5G48850 404 / 9e-143 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G465401 [exp] 297 / 6e-93 AT4G20900 337 / 1e-108 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G163500 [exp] 294 / 4e-92 AT4G20900 328 / 1e-105 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G033201 [exp] 53 / 9e-09 AT1G04770 53 / 2e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10028433 pacid=23165970 polypeptide=Lus10028433 locus=Lus10028433.g ID=Lus10028433.BGIv1.0 annot-version=v1.0 ATGTTGCAGGACATATGGAACGCTCCTCCGGGATTCAGACCCACCAAATCGGCGCCTGCCTCTCCGGCTAAGTCATCAGGCCTGTCCAGAACCCAGTCCT TCCATGCGATTCATAAAGTACCCGTAGGGGATACTCCCTATGTGCGAGCCAAAAATGTCCAGTTGGTGGAGAAAGATCCGGAGAAAGCAATTCCCCTGTT TTGGGCAGCCATAAATGCAGGGGATAGAGTCGACAGTGCTTTGAAAGACATGGCGATTGTAATGAAGCAACAGAATCGCGCTGAGGAAGCCATTGAAGCC ATTAAGTCACTGAGATCCCGCTGCTCCGATCAAGCTCAGGAGTCTCTTGATAATATCCTTCTGGATCTCTACAAGAGATGCGGAAGATTGGATGATCAGG TTGGACTGCTGAAACACAAGCTTTTCCTAATCCAGAAAGGTCTGGCCTTCAATGGAAAACGCACAAAAACTGCCAGATCTCAAGGGAAAAAGTTCCAGGT CTCCGTTGAACAAGAAGCAACTAGATTACTGGGGAACTTGGGGTGGGCGCTGATGCAGCAAGAGAACTTCACGGAAGCAGAGGATGCATACCGCAGAGCT CTGACAATCGCACCAGACAACAACAAAATGTGCAACTTGGGGATATGCCTGATGAAACAGGGGAGGATCTCGGAGGCGAAAGACAATCTCCGACGAGTGA AGCCGGCTGTGGCCGATGGGCCTAGAGGAGTTGATTCGCATCTCAAAGCTTACGAGAGAGCACAGCAGATGCTCAAGGATTTGGAGTCGGAGATCATGAT GAGCAACAAAGGAGTAGGCCAAGCCGAATGGTCCAGATTGTTCAACGCCTTCCTCGGCTCTTCTTCCATCTGGCAGCCGCAGCCTTGCAAGGACCACACC GGCGGTGCTGGCACGGGATCCGACGTGTCGAAAAAGTCAAGGGATGATTTCGGCGACGAAAATGTCAACGCTGGCAATCTCATCCCCCTCCCACCGCCGC AACTGCAGAAGAGTAGTGTGAAGCAGCAATTGGCATTTGAGAACTCATGGATTAATGTGGATGCACCGCCGTTTTATTCAGGGAAGCAGCCGAGTAATAA CAACAACAACAACTGTCATCAGATTCACGAGACATTGAAAAGGACGAGGTCTGGAAATTCGCAAAATGAAATGATTGTTAAACCGGAGACAAAGAAGAGG CTGTCCGATGAAACAGTGGACAGAAGAATGTCGGGGCTGTTACCGGACAGTAAGGACTTTGAGGATGCGATTATGGAGGCAGTTCTTGGTCCAGTTCCTA CGAAAGTGGCGGTGGGGGGGGGCGGGAGGCCACCGCATCCGCCGGGATTTGAATCGTTGGCGGCTGAGGGGAAGTTGGTACCGAGGAAGGTTGAGAAGAG GCTTAAGGTTTTCCAGGACATTACTCTGTCTCTCAGCCCTATAGGCCGAGCCTGA
AA sequence Show only first row Show all	>Lus10028433 pacid=23165970 polypeptide=Lus10028433 locus=Lus10028433.g ID=Lus10028433.BGIv1.0 annot-version=v1.0 MLQDIWNAPPGFRPTKSAPASPAKSSGLSRTQSFHAIHKVPVGDTPYVRAKNVQLVEKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEA IKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQVGLLKHKLFLIQKGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQENFTEAEDAYRRA LTIAPDNNKMCNLGICLMKQGRISEAKDNLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEIMMSNKGVGQAEWSRLFNAFLGSSSIWQPQPCKDHT GGAGTGSDVSKKSRDDFGDENVNAGNLIPLPPPQLQKSSVKQQLAFENSWINVDAPPFYSGKQPSNNNNNNCHQIHETLKRTRSGNSQNEMIVKPETKKR LSDETVDRRMSGLLPDSKDFEDAIMEAVLGPVPTKVAVGGGGRPPHPPGFESLAAEGKLVPRKVEKRLKVFQDITLSLSPIGRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10028433 [exp]	0	1
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10041887 [exp]	1.7	0.9798
AT2G36200			P-loop containing nucleoside t...		Lus10021340 [exp]	2.8	0.9778
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Lus10032452 [exp]	2.8	0.9782
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Lus10042952 [exp]	3.0	0.9782
AT3G21620			ERD (early-responsive to dehyd...		Lus10030024 [exp]	3.2	0.9769
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Lus10002895 [exp]	5.3	0.9691
AT4G21820			binding;calmodulin binding (.1...		Lus10007665 [exp]	5.6	0.9619
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Lus10004038 [exp]	5.7	0.9707
AT5G23910			ATP binding microtubule motor ...		Lus10027488 [exp]	5.9	0.9759
AT3G05330		ATN ,ATTAN	A. THALIANA TAN1, TANGLED, cyc...		Lus10004488 [exp]	6.0	0.9582

Compare expression of checked genes

Lus10028433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.