Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51280 521 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48850 282 / 2e-92 ATSDI1 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G04770 280 / 1e-91 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G20900 256 / 3e-80 TDM1, MS5 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G44330 224 / 5e-68 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G22794 82 / 2e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041887 [exp] 747 / 0 AT3G51280 572 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041886 [exp] 731 / 0 AT3G51280 566 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028433 [exp] 720 / 0 AT3G51280 569 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011872 [exp] 283 / 4e-93 AT5G48850 392 / 2e-138 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023256 [exp] 279 / 2e-88 AT4G20900 330 / 4e-108 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000753 [exp] 271 / 5e-88 AT1G04770 391 / 2e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011738 [exp] 266 / 3e-86 AT1G04770 389 / 1e-136 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022806 [exp] 279 / 2e-85 AT5G05740 644 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3) Lus10008852 [exp] 270 / 7e-85 AT4G20900 311 / 7e-101 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G056500 [exp] 585 / 0 AT3G51280 603 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G112100 [exp] 583 / 0 AT3G51280 595 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G177600 [exp] 300 / 1e-99 AT1G04770 384 / 8e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G240700 [exp] 286 / 5e-94 AT5G48850 404 / 9e-143 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G050600 [exp] 286 / 5e-94 AT1G04770 381 / 6e-134 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G465401 [exp] 297 / 3e-93 AT4G20900 337 / 1e-108 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G163500 [exp] 294 / 1e-92 AT4G20900 328 / 1e-105 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G033201 [exp] 53 / 8e-09 AT1G04770 53 / 2e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10028434 pacid=23166125 polypeptide=Lus10028434 locus=Lus10028434.g ID=Lus10028434.BGIv1.0 annot-version=v1.0 ATGTTGCAGGACATGTGGAACTCTCCTCCGGGATTCAGACCCACCAAATCGGCGCCTGCATCTCCGGCGAAGCCATCAAACCTGTCCAGAACCCAGTCTT TCCATGCGATTCATAAAGTACCCGTAGGGGACACTCCCTATGTGCGAGCCAAAAATGTCCAGTTGGTGGAGAAAGATCCGGAGAAAGCAATTCCCCTGTT TTGGGCAGCCATAAATGCAGGGGATAGAGTCGACAGTGCTTTGAAAGACATGGCGATTGTAATGAAGCAACAGAATCGCGCTGAGGAAGCCATTGAAGCC ATCAAGTCACTGAGATCCCGCTGCTCCGATCAAGCTCAGGAGTCTCTTGATAATATCCTTCTGGATCTCTACAAGAGATGCGGGAGATTAAATGATCAGG TTGGGCTATTGAAACACAAGCTATTCCTGATTCAGAAAGGACTGGCCTTCAATGGAAAACGAACAAAAACCGCCCGATCCCAAGGGAAAAAGTTCCAGGT CTCTGTTGAACAAGAAGCAACTAGATTACTGGGGAACTTGGGATGGGCACTGATGCAGCAAGAAAACTTCACGGAAGCAGAGGATGCATACCGGAGAGCT CTGACAATCGCACCAGACAACAACAAAATGTGCAACTTGGGTATATGCTTGATGAAACAGGGGAGGATCTCCGAGGCGAAAGCCAATCTACGACGAGTGA AGCCGGCGATCGCAGACGGACCAAGAGGCGTCGATTCGCATCTCAAGGCTTACGAAAGAGCACAGCAGATGCTCAAGGATTTGGAGTCGGAGATCATGAT GAGCAACAAAGGAGTAGGCCAAGCCGAATGGTCCAGATTGTTCAACGCCTTCCTCGGCTCTTCTTCCATCTGGCAGCCGCAGCCTTGCAAGGACCACGGC TCCAGCGGCGGCGGCTTGTTGAAAAAGTCAAAGGATGATTTCGGCGATGAGAATGTCAACGCCGCCAATCTCATCCCGCTCCCTCCACCGCAGCAACAGC AGCAGAAGAATGTAAAGCAGCAATTAGCTTTTGGAAACTCGTGGATTAATGTGGATGCTCCGCCGTTCTTTTCAGGGAAGCAACCGAGTAATAACAACAA CAATCATCAGATTCACGAAACATTGAAAAGGACGAGGTCTGGAAATTCTGAAAATGAAATGATTGTTAAACCGGAGACCAAGAAGAGGCTGTCTGGTGAA ACAGGGGACCTAAAATTGTCGGCCGGGCTGTTGCCGGACAGTAAGGACTTTGAGGATGCGATTCTGGAGGCAGTTCTTGGTCCAGTTCCTACGAAAGTGG CGGCGGGGGCCTACAAAAGTGGCGACGGCGGACGCTTCAAGGAGGCCACCGCATCCGCCGGGATTTGA
AA sequence Show only first row Show all	>Lus10028434 pacid=23166125 polypeptide=Lus10028434 locus=Lus10028434.g ID=Lus10028434.BGIv1.0 annot-version=v1.0 MLQDMWNSPPGFRPTKSAPASPAKPSNLSRTQSFHAIHKVPVGDTPYVRAKNVQLVEKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEA IKSLRSRCSDQAQESLDNILLDLYKRCGRLNDQVGLLKHKLFLIQKGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQENFTEAEDAYRRA LTIAPDNNKMCNLGICLMKQGRISEAKANLRRVKPAIADGPRGVDSHLKAYERAQQMLKDLESEIMMSNKGVGQAEWSRLFNAFLGSSSIWQPQPCKDHG SSGGGLLKKSKDDFGDENVNAANLIPLPPPQQQQQKNVKQQLAFGNSWINVDAPPFFSGKQPSNNNNNHQIHETLKRTRSGNSENEMIVKPETKKRLSGE TGDLKLSAGLLPDSKDFEDAILEAVLGPVPTKVAAGAYKSGDGGRFKEATASAGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10028434 [exp]	0	1
AT2G44190		EMB3116, EDE1, ...	QWRF domain containing 5, EMBR...		Lus10039129 [exp]	1.4	0.9859
AT4G02800			unknown protein		Lus10014668 [exp]	1.7	0.9860
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10041886 [exp]	2.4	0.9849
AT3G15550			unknown protein		Lus10025757 [exp]	3.5	0.9768
AT4G02800			unknown protein		Lus10000658 [exp]	3.5	0.9800
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10033674 [exp]	4.5	0.9778
AT4G17000			unknown protein		Lus10035651 [exp]	5.2	0.9713
AT4G13370			Plant protein of unknown funct...		Lus10019398 [exp]	5.7	0.9729
AT4G32830		ATAUR1	ataurora1 (.1)		Lus10006033 [exp]	8.8	0.9686
AT5G27550			P-loop containing nucleoside t...		Lus10029914 [exp]	9.9	0.9730

Compare expression of checked genes

Lus10028434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.