Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17820 1474 / 0 AHK1, ATHK1 histidine kinase 1 (.1) AT2G47430 135 / 1e-31 CKI1 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) AT2G01830 114 / 3e-25 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT1G27320 112 / 1e-24 AHK3 histidine kinase 3 (.1) AT5G35750 100 / 3e-21 AHK2 histidine kinase 2 (.1) AT1G66340 88 / 2e-17 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT2G40940 74 / 4e-13 ERS1 ethylene response sensor 1 (.1) AT5G10720 74 / 7e-13 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) AT3G04580 73 / 8e-13 EIN4 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) AT3G23150 52 / 4e-06 ETR2 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041891 [exp] 2179 / 0 AT2G17820 1561 / 0.0 histidine kinase 1 (.1) Lus10029849 [exp] 171 / 8e-43 AT2G47430 489 / 2e-153 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Lus10037032 [exp] 121 / 1e-27 AT1G27320 1094 / 0.0 histidine kinase 3 (.1) Lus10003686 [exp] 120 / 4e-27 AT2G01830 1330 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10015773 [exp] 119 / 5e-27 AT1G27320 1395 / 0.0 histidine kinase 3 (.1) Lus10028992 [exp] 119 / 7e-27 AT2G01830 1337 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10013250 [exp] 117 / 2e-26 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10030772 [exp] 112 / 1e-24 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10012325 [exp] 111 / 2e-24 AT5G35750 1278 / 0.0 histidine kinase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G111700 [exp] 1458 / 0 AT2G17820 1435 / 0.0 histidine kinase 1 (.1) Potri.007G056400 [exp] 1456 / 0 AT2G17820 1475 / 0.0 histidine kinase 1 (.1) Potri.013G009700 [exp] 211 / 1e-55 AT2G47430 572 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Potri.014G121500 [exp] 144 / 2e-34 AT2G47430 753 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Potri.008G191100 [exp] 143 / 2e-34 AT2G47430 746 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Potri.001G057400 [exp] 125 / 9e-29 AT1G27320 1384 / 0.0 histidine kinase 3 (.1) Potri.003G171000 [exp] 119 / 9e-27 AT1G27320 1425 / 0.0 histidine kinase 3 (.1) Potri.008G137900 [exp] 117 / 2e-26 AT2G01830 1390 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.014G164700 [exp] 111 / 2e-24 AT5G35750 1359 / 0.0 histidine kinase 2 (.1) Potri.010G102900 [exp] 107 / 3e-23 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [flax] [poplar] His_Kinase_A PF00512 [flax] [poplar] HisKA His Kinase A (phospho-acceptor) domain CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence Show only first row Show all	>Lus10028438 pacid=23166060 polypeptide=Lus10028438 locus=Lus10028438.g ID=Lus10028438.BGIv1.0 annot-version=v1.0 ATGGATCAAGAGAGAAGAGTCGCTATTGCTTCAGAATGTTCTTCGCCATTCAGCCCAGCCATCGCTTCTCCTTTCGCCAGGTTTCTAGACGTGATTGGAA GCTTCCCCACTTGGCCATGGGGGAGATCAAACAATTCATCCCATCAAGGTTCAGGAAGAAGAAGAAGAGTGTTCCATAGGGATGTTGAACAGGACGAGTT TCACTCAGCAACTGCTGCTCACTGTCTCTCTTCTTATTACAGTGTTTTCGTAGTTCGCCTTGCCATCATGGTGATGCTAGCAATTTTAATAGGTCTGTTG ACCGTGTTGACCTGGCATTTCACAAGGAGCTACACCAAGAAGTCACTTGACACTTTAGCTTCTGGTCTTAGATATGAGCTACTACAGCGGCCTATATTAA GGATGTGGAACATTCTAAACTCGACTTCTGAGATTACCACGGCTCAAGTTAAGCTCTCTGAGTATGTCTTAAGACGCTACAGCAAACCAGAAACGCAGGC TGAACAAGTTGAGCTGTATGAAATGATGAGAGATGTGACTTGGGCACTGTTTGTGAGCAGAAAGGCACTGAATGCAATAACCATAAACTACAGAAACGGC TTTGTTCAGGCTTTCCATAGAGACCACATAACCAACAACACATTCTACATCTATTCCGACCTTGTCAACTACTCCATCAGCTCCTACGGTGTCGACAAAT CACTCTCAGCTCATCGAGGATGGGACACTGAATCGATTCGCAACAACTTCTCTGCGATTTGGTATCGCGAGCCACTCGATCCTCTCACGGGAGAGAAGCT AGGGAAAGCGCAGCCTATCCTGCCCGATGACCTCATCAACATTGCGGGTTTATCGCAGGTGCCAGATGGCGTGGCATCATGGCACGTGGCGGTGACCAAA TATGCTGACTCACCAATGCTTTCCGCGGCATTGCCCGTTTGGGATGCTTCGAACAAGAGCATCATTGCAGTTGTGGGTGTCACAACTGCACTTTACAGCG TTGGCCAGCTGATGAGAGAGCTTGTTGAAGTTCACAGTGGTCATATGATTTACTTAACCTCTCAAGAAGGCTATTTGCTTGCTACTTCCACAAATGCACC TCTTTTAACGAATTCGTCGTCGTCGGGGCCCAAGCTTATGATGGCTGTTGACTCTCAAGATCCTATTATAAGGATGGGAGCTCAATGCTTGGATAGAATC TATGGGAACAACTTCCCATCTGGCCATGTCGTTCATGTTGAAAACGCGAAGCTTGGCCGGCAAGAATACTATATTGATTCTTTCTTTCTCAATCTGAAAA AACTCCCCATAGTTGGGGTTATAATCATTCCAAGAAGATACATAATGGGAAAGGTGGATGAGAGAGCCTTCAAGACATTGGTTATACTGATTTCTGCCTC TTTATGCATTCTGGTCACTGGATGTGTCTTCATCTTGATTCTCACTAATGGAGTTTCTAAGGAAATGAAACTGAGAGCTGAACTTATTAGCCATCTCGAT GCCAGACGAAGGGCTGAAGCATCAAACAACTATAAAACCCAGTTTCTGGCAAACATGAGTCATGAACTGAGGACTCCTATGGCTGCAGTAATTGGACTAT TGGACATTCTCATCTCTGATGATTGTCTCACAAATGAACAGTACTCAACTGTAACCCAAATCAGAAAATGCTCCACAGCTTTGCTCCGCCTTCTGAACAA TATATTGGATCTCAGTAAGGTTGAATCTGGTAAGCTGGTCTTGGAAGATGCTGAGTTTGATTTGTGCAGAGAACTTGAAGGACTGATTGATATGTTCTCA GTACAGTGTATTAGCCATAATGTGGAGGCTGTTTTAGATATCTCTGATGACATGCCAAAACTAGTAAGCGGAGACTCTGCGAGGGTGGTTCAGATATTTG CCAATCTGATCAGCAATTCCATCAAGTTTACAACATCGGGTCACATAATCCTGAGAGGCTGGTGTGAAAACTTGAATAGCTTTGATTATGCTGAAAAGTT CCCTGCTGAGAATAAGAAAATGAGATGTGCTATCAAGGCAAAGTTGAGGCAACATGGGAATCACTTGAAGAAAGCTACTAAGAAGGAGAACAAAGTGATT CTGTGGTTTGAAGTTGATGATACAGGCTGCGCTCCTGGAGGAACTAGAACCAATTTCTGTTTTCCCTTGTTCGCTTCAGGAATTGATCCAAGCAAATGGG AGTCTGTATTTGAGAGCTTTGAGCAAGCTGATCCATCTACGACACGGTTGCACGGTGGCACTGGCCTTGGATTATGCATTGTCCGGACCTTGGTCCAGAA AATGGGTGGAGAGATTAAAGTTGTGAAGAAGAATGGACCAGGAACTCTAATGAGACTGTTCTTGCTTATAAGTGCACCTGCAGATATCACAGAACAACAT TTGCAAGTCGATTTCGCTAGGCATAATTTGGTGATCTTGCTTGCACTACACGGCACAATGGGAAGAGTTGTTATGTCGAAATGGCTACAGAAAATAGGTC TGTCTACAGTAGGAGTATCCGAATGGAACGAATTGACCCAAGTCCTCCGAGAACTCTTCCAATCAAGAACACGAAACAACACCAATAATAAAAACTCCTT TGACACTCACTACCCTCTGAAGGAGGCGGTGAAATCAGAACTCCTGAACATCAAAGACATGAAGGAAGCCTTACTCGTCATAGTTGTGGACATCGGAATT CTCGACTTAAGCACAGAGATATGGAAAGAGCAGCTAAACTTCCTGGAAAAATTCTCAGGCAAAGCCAAGTTCGCTTGGATGCTAAACCACGATACTTCCA ACGCAGTAAAGATGGAACTTCGTCGCAAAGGGCACATGTTAATGGTCAACAAGCCTCTCTACAAGGCCAAAATGGTTCAAATCATGGAAGCCATTGTGAA AGATCACAACTTTAACCAGCAGAGGACCCGGAGGCACGAATTTCAGGAGATTGATGCCACTGATCAGTTCGAAACTGCCAGCTGCTCCGAGGATTCTGAT GAACTTGTTCTCCCAACAACCACAACAACTTCTTCATCTCAATATAACCAGAAGTGTTTAGTCGAAATGACCGATGTGCACTCGGAGGGTCGTAGTTCCA GCAGAAGGGAAAGCAGTAATTCGGAGGGAATCACTGCCAATAAGCGGACAAAATCGCTGGATGGGTTGAGGATTCTGCTAGCGGAAGACACTCCAGTTCT GCAAAGAGTTGCTACCGTTATGTTGGAGAAAATGGGGGCTACTGTTGTATCAGTAGGAGATGGAGTTCAAGCAGTGGATGCTCTGAACAGCGTTGTTGAT CGCACTGCTAGCACAGATGATCATGAGATTCAGAGAACTTCTCAGCCGTTTGATCTTGTGTTGATGGATTGTCAGATGCCGAAGCTGGATGGTTACGAAG CGACCAAGGAGATTAGGAGAACAGAAGAAGGGAAAGGGGTGCATATTCCTATCGTGGCGTTGACTGCACACGCAATGTCGTGTGATGAAGCTAAGTGCTT GGCAGTTGGGATGGATGCGTATCTGACGAAGCCGATTGATTATAAGCTTATGGTTTCCACCATTTTGTCACTTACTAGACCTACACCGACGTCGTAA
AA sequence Show only first row Show all	>Lus10028438 pacid=23166060 polypeptide=Lus10028438 locus=Lus10028438.g ID=Lus10028438.BGIv1.0 annot-version=v1.0 MDQERRVAIASECSSPFSPAIASPFARFLDVIGSFPTWPWGRSNNSSHQGSGRRRRVFHRDVEQDEFHSATAAHCLSSYYSVFVVRLAIMVMLAILIGLL TVLTWHFTRSYTKKSLDTLASGLRYELLQRPILRMWNILNSTSEITTAQVKLSEYVLRRYSKPETQAEQVELYEMMRDVTWALFVSRKALNAITINYRNG FVQAFHRDHITNNTFYIYSDLVNYSISSYGVDKSLSAHRGWDTESIRNNFSAIWYREPLDPLTGEKLGKAQPILPDDLINIAGLSQVPDGVASWHVAVTK YADSPMLSAALPVWDASNKSIIAVVGVTTALYSVGQLMRELVEVHSGHMIYLTSQEGYLLATSTNAPLLTNSSSSGPKLMMAVDSQDPIIRMGAQCLDRI YGNNFPSGHVVHVENAKLGRQEYYIDSFFLNLKKLPIVGVIIIPRRYIMGKVDERAFKTLVILISASLCILVTGCVFILILTNGVSKEMKLRAELISHLD ARRRAEASNNYKTQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLCRELEGLIDMFS VQCISHNVEAVLDISDDMPKLVSGDSARVVQIFANLISNSIKFTTSGHIILRGWCENLNSFDYAEKFPAENKKMRCAIKAKLRQHGNHLKKATKKENKVI LWFEVDDTGCAPGGTRTNFCFPLFASGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLVQKMGGEIKVVKKNGPGTLMRLFLLISAPADITEQH LQVDFARHNLVILLALHGTMGRVVMSKWLQKIGLSTVGVSEWNELTQVLRELFQSRTRNNTNNKNSFDTHYPLKEAVKSELLNIKDMKEALLVIVVDIGI LDLSTEIWKEQLNFLEKFSGKAKFAWMLNHDTSNAVKMELRRKGHMLMVNKPLYKAKMVQIMEAIVKDHNFNQQRTRRHEFQEIDATDQFETASCSEDSD ELVLPTTTTTSSSQYNQKCLVEMTDVHSEGRSSSRRESSNSEGITANKRTKSLDGLRILLAEDTPVLQRVATVMLEKMGATVVSVGDGVQAVDALNSVVD RTASTDDHEIQRTSQPFDLVLMDCQMPKLDGYEATKEIRRTEEGKGVHIPIVALTAHAMSCDEAKCLAVGMDAYLTKPIDYKLMVSTILSLTRPTPTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Lus10028438 [exp]	0	1
AT1G61065			Protein of unknown function (D...		Lus10011208 [exp]	1.4	0.8221
AT4G19670			RING/U-box superfamily protein...		Lus10036202 [exp]	5.7	0.8146
AT5G44070		ATPCS1, ARA8, C...	CADMIUM SENSITIVE 1, ARABIDOPS...		Lus10003623 [exp]	6.7	0.7930
AT2G01910		ATMAP65-6	Microtubule associated protein...		Lus10031939 [exp]	6.9	0.8109
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10043340 [exp]	8.5	0.7648
					Lus10040594 [exp]	9.4	0.6916
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10000064 [exp]	9.9	0.7645
AT5G41940			Ypt/Rab-GAP domain of gyp1p su...		Lus10033232 [exp]	11.5	0.7605
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10039575 [exp]	12.5	0.7959
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10027139 [exp]	13.0	0.7900

Compare expression of checked genes

Lus10028438 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.