Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51250 455 / 1e-157 Senescence/dehydration-associated protein-related (.1) AT2G17840 442 / 6e-153 ERD7 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) AT4G35985 416 / 8e-143 Senescence/dehydration-associated protein-related (.1) AT4G15450 150 / 4e-41 Senescence/dehydration-associated protein-related (.1) AT3G21600 149 / 2e-40 Senescence/dehydration-associated protein-related (.1.2) AT3G21590 56 / 8e-09 Senescence/dehydration-associated protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041892 [exp] 523 / 0 AT3G51250 358 / 9e-122 Senescence/dehydration-associated protein-related (.1) Lus10027840 [exp] 384 / 1e-127 AT2G17840 489 / 4e-169 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10014132 [exp] 352 / 6e-118 AT2G17840 476 / 1e-166 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10005067 [exp] 346 / 2e-115 AT2G17840 459 / 5e-160 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10034499 [exp] 225 / 4e-71 AT2G17840 306 / 2e-103 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10043028 [exp] 147 / 1e-39 AT4G15450 373 / 3e-128 Senescence/dehydration-associated protein-related (.1) Lus10012957 [exp] 141 / 6e-38 AT4G15450 321 / 1e-108 Senescence/dehydration-associated protein-related (.1) Lus10011127 [exp] 139 / 1e-36 AT4G15450 382 / 8e-132 Senescence/dehydration-associated protein-related (.1) Lus10034498 [exp] 99 / 2e-24 AT3G51250 97 / 9e-25 Senescence/dehydration-associated protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G111600 [exp] 499 / 6e-175 AT2G17840 491 / 3e-172 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Potri.004G174100 [exp] 421 / 7e-145 AT2G17840 472 / 7e-165 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Potri.009G133500 [exp] 367 / 8e-124 AT2G17840 449 / 1e-156 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Potri.018G087500 [exp] 158 / 9e-44 AT4G15450 401 / 5e-139 Senescence/dehydration-associated protein-related (.1) Potri.006G164748 [exp] 129 / 3e-33 AT4G15450 332 / 3e-112 Senescence/dehydration-associated protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06911 [flax] [poplar] Senescence Senescence-associated protein
Representative CDS sequence Show only first row Show all	>Lus10028439 pacid=23166034 polypeptide=Lus10028439 locus=Lus10028439.g ID=Lus10028439.BGIv1.0 annot-version=v1.0 ATGGCGTCCCAGAACCCTAAGTCCGATCAGAAGAATTCTTCTCTCTATCCACAAGTTATACAATCTAATCCAGAAGCCAACAATGTGCACATTTCTTGTT CTACGTCGTCGTCGGCGTCATCTAATCTCTATCCAACCATCGACAAGCAGGACCTCGTCGAAAATTTCTTCCCGGAGCATTCCGCAGAGAGACATAAAGT TGCGGAAAAGCAATATTCTCCCTCTGCACCGCCCATGGCGACGGAGGAATTGCTTATCAGAATCCCCGGCGCAATCCTGAACCTCGTGGATAAAACCTAC AGCGTCGAGCTCGCATCCGGCGATCTATCTGTCATCCTCCTCCGTCAAGGAAACAGCATTGTCGCGGTTCTGGCTCGAGTGGGGAATGAGATTCAGTGGC CGTTGGGGAAAGAAGGAGCCGCCGTGAAGCTGGGTGAGTCGCATTATTTTTTCTCCCTTCGATTGCCGCAGGAGCAGGGATCGGATTCGAGTGATAATAG GAAGGATAAGAAAACAGGTAAGAATGAACAGGAGGAGATGTTGAATTATGGATTGACGATTGCATCCAAGGGGCAGGAAGGGGTTTTGAAGGAGCTGGAT GAGATATTCAAGACATACTGTTGTTTCTCGGTCCAAAAGGTGTCGGAGAAGGCGAATGAGTCTATGGCAAATGAGATGTCGCCTAAAGATTTGGAATTGG AGGAGAAGAAGGCGATGATGGAAGGGAATTGCGCGGCTTACTGGACGGCACTGGCTCCGAATGTGGAAGATTATAGCAGCAGTGCTGCGAGGCTGATCGC GACTGGATCAGCACAGCTCATTAAGGGGATATTGTGGTGTGGAGATGTGACTGTTGACAGGTTGAAGAAGGGAAATGAGGCAATGAAGCAGAGGATGAGT CCCAAATCAAACGCTGAGATGGAAATGGTGGGTGGTGATGCTGAGTTTCATTGCAGGGTTAAGCGGATGACTGAATTGACTGAGAAAGTGGCAAACGGGG TGCTCTCTGGTGTGGTTAAAGTAACAGGACTTTTCACAAGCTCAGTCGCTAACTCGAAGATGGGCAAGAAAGTGTTGGGCCTTCTGCCTGGTGAAATTGT TCTTGCGTCTTTGGATGGATTCAGCAAGGTGTGTGATGCTGTAGAAGTAGCTGGGAGGAGTGTTATGTCAACATCATCCGATGTTACAACTGATATGGTT TCCCACAGATATGGTGAAGAAGCAGGTAAGGCTACGAATGAAGGCCTTGGTGCTGCAGGGCATGCGTTTGGGGTTGCTTGGGCTGCTCTCAAAATTAGGA AGGCTCTTAACCCCAAAAGTGCTCTGAAGCCCACCAAGCTCGCCAAGTCTGTTAAAATTGCAGCCGAGGAAGTGAAGGCCAAGGCAGCCAAATAA
AA sequence Show only first row Show all	>Lus10028439 pacid=23166034 polypeptide=Lus10028439 locus=Lus10028439.g ID=Lus10028439.BGIv1.0 annot-version=v1.0 MASQNPKSDQKNSSLYPQVIQSNPEANNVHISCSTSSSASSNLYPTIDKQDLVENFFPEHSAERHKVAEKQYSPSAPPMATEELLIRIPGAILNLVDKTY SVELASGDLSVILLRQGNSIVAVLARVGNEIQWPLGKEGAAVKLGESHYFFSLRLPQEQGSDSSDNRKDKKTGKNEQEEMLNYGLTIASKGQEGVLKELD EIFKTYCCFSVQKVSEKANESMANEMSPKDLELEEKKAMMEGNCAAYWTALAPNVEDYSSSAARLIATGSAQLIKGILWCGDVTVDRLKKGNEAMKQRMS PKSNAEMEMVGGDAEFHCRVKRMTELTEKVANGVLSGVVKVTGLFTSSVANSKMGKKVLGLLPGEIVLASLDGFSKVCDAVEVAGRSVMSTSSDVTTDMV SHRYGEEAGKATNEGLGAAGHAFGVAWAALKIRKALNPKSALKPTKLAKSVKIAAEEVKAKAAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51250			Senescence/dehydration-associa...		Lus10028439 [exp]	0	1
AT2G18060	NAC	ANAC037, VND1	Arabidopsis NAC domain contain...		Lus10041822 [exp]	1.4	0.8806
AT5G55470		ATNHX3	Na+/H+ \(sodium hydrogen\) exc...		Lus10016583 [exp]	2.4	0.8227
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10039935 [exp]	5.3	0.8267
AT5G17260	NAC	ANAC086	NAC domain containing protein ...		Lus10010371 [exp]	13.0	0.7897
AT2G18060	NAC	ANAC037, VND1	Arabidopsis NAC domain contain...		Lus10028372 [exp]	13.4	0.8036
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10011716 [exp]	13.7	0.8064
AT1G14690		MAP65-7	microtubule-associated protein...		Lus10035098 [exp]	14.5	0.8121
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10011717 [exp]	16.7	0.8049
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10007479 [exp]	17.0	0.8004
AT2G32300		UCC1	uclacyanin 1 (.1)		Lus10003799 [exp]	18.7	0.7969

Compare expression of checked genes

Lus10028439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.