Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66180 518 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT1G06560 71 / 6e-13 NOL1/NOP2/sun family protein (.1) AT2G22400 57 / 2e-08 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G40000 54 / 2e-07 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G26600 48 / 9e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G13180 48 / 1e-05 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) AT5G55920 44 / 0.0001 OLI2 OLIGOCELLULA 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041897 [exp] 627 / 0 AT4G10770 1097 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10020217 [exp] 56 / 4e-08 AT2G22400 975 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10007337 [exp] 56 / 4e-08 AT1G06560 725 / 0.0 NOL1/NOP2/sun family protein (.1) Lus10020761 [exp] 55 / 7e-08 AT1G06560 714 / 0.0 NOL1/NOP2/sun family protein (.1) Lus10032368 [exp] 50 / 3e-06 AT4G26600 736 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10016622 [exp] 49 / 5e-06 AT3G13180 759 / 0.0 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) Lus10023095 [exp] 47 / 2e-05 AT4G26600 736 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10026452 [exp] 47 / 2e-05 AT5G26180 567 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G056800 [exp] 560 / 0 AT5G66180 502 / 2e-178 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.005G204900 [exp] 66 / 1e-11 AT1G06560 758 / 0.0 NOL1/NOP2/sun family protein (.1) Potri.007G096100 [exp] 59 / 5e-09 AT2G22400 1012 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G368500 [exp] 52 / 4e-07 AT3G13180 770 / 0.0 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) Potri.001G369600 [exp] 45 / 8e-05 AT4G26600 696 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.006G224000 [exp] 43 / 0.0003 AT5G26180 585 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01189 [flax] [poplar] Methyltr_RsmB-F 16S rRNA methyltransferase RsmB/F
Representative CDS sequence Show only first row Show all	>Lus10028444 pacid=23166046 polypeptide=Lus10028444 locus=Lus10028444.g ID=Lus10028444.BGIv1.0 annot-version=v1.0 ATGGCAGAACCGTCGGAGCTTCCTTTGCCAGAAGCTTTTCTTGCTTTCCTTCAAGCGAACGGGATTGACCCGGCGATATATACTGCAAGCTATCTGATTC CTCGATACATAAGATTGAAGCCTGGGATTGAACTGCTTCTTGAAGAGATTGAAGCTGAGATGATGTGTCAGCTTGAGAGAGTTGGGTGGTTGCCTGGTTT CTATTCGCTTCCTCCGCAAATTCAGATTGCCAGCTCAAAAGCATACAAAGAGGGAAAGATTTATGGAGTCGATGCATCATCTGGAGCTGCTGTTATGGCA TTGAATGTGTCAGTGGGGGATCATGTTCTTGACCTTTGTGCTGCTCCTGGTGCTAAACTTTGTATGATGTTGGACCTTCTTGGTGATTCTGGCTCCGTAA CTGGTGTTGATGTCGCAAGCCACCGTCTTGCTGCTTGTAGAACCTTGCTTCAGAAGTATGGAATTGGTGATAGGTGCCGGCTTTTCGTCGGTGATGGGAC AAAGTTTTCTCTCATTCCTGTGAAGGGTTGTTGGGATTCAGATTCTTCATCATGTCAATCAGAAGTGGAAGAAGATGATATATTTAAGGAGTGGACTTCT AGAAGACCATGGAAAGAGAGGAAAAAAACAGCTAAAGCAAGGAAATGTTCTTCTGTGCAAGTAATTGCAGAAAGTAATCCTCCTGAACTTATCTTCTATG GACGGAATTCTGGAGTCATTGGGTCGAGGAAAAGTGAATTGTATCAAACTGTACCCAATGGTGTAGTTTCAAGCGGTGGCTATGACAAGGTTCTTGTGGA TGCAGAGTGCACTCATGATGGCTCAGTTAAACATGTCCAGAAGTTTGAACAGTGGGGTTGGGAAACCCTTAACCAACGTGTGTTGAATGCTGAGAGAACC GATGACCTGACCACTCTTCAGATGAACCTCCTGAGAAATGGTTTCAGGTTACTGAAAATCGGCGGCTCCCTTATCTACAGCACTTGTAGTTTAACAGTTT CACAGAATGAAGAAGTGATAGGGAAGTTTCTTGAAGAGAATACATCTGCTGAGTTGTTGGAGATAGATGCTGCCAGAGATTGGCCATGCAAGAGTGGAAG GATACCAAAGACCTTACGCTTTGATCCCGTGACTTCGAAAACCAGTGGACTGTTTATAGCCAAGTTCACAAAACTGGCCTTGTGA
AA sequence Show only first row Show all	>Lus10028444 pacid=23166046 polypeptide=Lus10028444 locus=Lus10028444.g ID=Lus10028444.BGIv1.0 annot-version=v1.0 MAEPSELPLPEAFLAFLQANGIDPAIYTASYLIPRYIRLKPGIELLLEEIEAEMMCQLERVGWLPGFYSLPPQIQIASSKAYKEGKIYGVDASSGAAVMA LNVSVGDHVLDLCAAPGAKLCMMLDLLGDSGSVTGVDVASHRLAACRTLLQKYGIGDRCRLFVGDGTKFSLIPVKGCWDSDSSSCQSEVEEDDIFKEWTS RRPWKERKKTAKARKCSSVQVIAESNPPELIFYGRNSGVIGSRKSELYQTVPNGVVSSGGYDKVLVDAECTHDGSVKHVQKFEQWGWETLNQRVLNAERT DDLTTLQMNLLRNGFRLLKIGGSLIYSTCSLTVSQNEEVIGKFLEENTSAELLEIDAARDWPCKSGRIPKTLRFDPVTSKTSGLFIAKFTKLAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66180			S-adenosyl-L-methionine-depend...		Lus10028444 [exp]	0	1
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10010521 [exp]	1.0	0.9033
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10035640 [exp]	1.4	0.8753
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10021351 [exp]	4.0	0.8345
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10009754 [exp]	4.2	0.8658
AT3G46220			unknown protein		Lus10004920 [exp]	5.3	0.8369
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10017098 [exp]	6.6	0.8505
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10013599 [exp]	7.7	0.8438
AT3G09370	MYB	ATMYB3R-3, ATMY...	myb domain protein 3R3, myb do...		Lus10025351 [exp]	8.1	0.7971
AT1G31430			Pentatricopeptide repeat (PPR-...		Lus10002288 [exp]	8.8	0.7940
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10003795 [exp]	9.5	0.8336

Compare expression of checked genes

Lus10028444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.