Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10770 887 / 0 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) AT4G27730 791 / 0 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) AT5G53520 778 / 0 ATOPT8 oligopeptide transporter 8 (.1) AT5G53510 753 / 0 ATOPT9 oligopeptide transporter 9 (.1) AT1G09930 717 / 0 ATOPT2 oligopeptide transporter 2 (.1) AT5G64410 711 / 0 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) AT4G26590 652 / 0 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) AT4G16370 649 / 0 ATOPT3 oligopeptide transporter (.1) AT5G55930 641 / 0 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041897 [exp] 1176 / 0 AT4G10770 1097 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10006581 [exp] 889 / 0 AT4G10770 1260 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10022372 [exp] 837 / 0 AT4G27730 1094 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Lus10007770 [exp] 832 / 0 AT4G27730 936 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Lus10016632 [exp] 695 / 0 AT4G26590 981 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022543 [exp] 693 / 0 AT4G26590 1084 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022541 [exp] 652 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10039075 [exp] 642 / 0 AT4G16370 1304 / 0.0 oligopeptide transporter (.1) Lus10031978 [exp] 642 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G056900 [exp] 1020 / 0 AT4G10770 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.003G145500 [exp] 931 / 0 AT4G10770 1197 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.012G019700 [exp] 816 / 0 AT4G27730 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.012G019500 [exp] 805 / 0 AT4G27730 1092 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.009G079500 [exp] 722 / 0 AT5G64410 1214 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.002G109300 [exp] 711 / 0 AT1G09930 1114 / 0.0 oligopeptide transporter 2 (.1) Potri.005G150400 [exp] 711 / 0 AT5G64410 1106 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.016G004800 [exp] 669 / 0 AT4G26590 988 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.001G369700 [exp] 660 / 0 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.001G370100 [exp] 652 / 0 AT4G26590 1006 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10028445 pacid=23166005 polypeptide=Lus10028445 locus=Lus10028445.g ID=Lus10028445.BGIv1.0 annot-version=v1.0 ATGGACCCTCGGCGCAGTCGCCTGCCTCCTCTTATCATTCCTCAACCAGTTCTTCTGGAACCGGAAGGAGCCGCTCTCACCGGCAATCCTTACGCGATTC ACATCGTCAGCGCCGTCAAACTGTTCTACAAAAAGGAGTTGACTTTCTTTGTGGCGCTTCTGGTGGTATTGACTACTCAGGTGCTCGGATTCGGCTGGGC TGGAATCTTCCGACGGTACCTGGTGGAGCCGGCTGCCATGTGGTGGCCTCAGAACCTCGTCCAAGTTTCTCTCTTCCGGGCATTACATGAGAAAGAGGAT AGGAGGAAAGGTGGAGTAACAAGAACTCAGTTCTTCATCATTGCATTCATCTGCAGCTTTGCTTACTATGTGTTCCCTGATTACCTCTTCTCCAAGTTAT CTTCCTTCTCCTGGGTTTGCTGGGTGTTCCCAGCTTCGATTCTAGTTCACCAGCTCGGTTCGGGTTACCGCGGACTTGGGATCGGTGCTTTAGGCTTCGA TTGGGCTACCGTCTCTGCTTACCTAGGAAGTCCATTGGCAAGCCCTTGGTTCGCCACTGCAAATGTCGCCGTTGGCTTTGGTATGTTCATGTATGTCATC ACTCCTCTTGCGTATTGGCTCGACGTTTATAGGGCCAAGACGTTCCCCATTTTCTCGGATGGCTTGTTCAGAGCTGACGGTCAGGATTACAATATCTCGG CCATTGTTGACTCGAACTTCCACATCGACGTGGGTGCTTATAAACAGCAAGGCCCTCTTTATCTCAGCACCGTTTTCGCGATGGTTTACGGGTGTAATTT CGCTTGCCTTACTGCAACAATTGTTCATGTCTTCCTTTTCCATGGACGGGATATATGGGAGCTGAGCAAGTCTGCCTTCCAAGAGAAGCAAATGGATGTG CATACAAAGCTAATGAGAAAATACAAGCAAGTTCCAGAGTGGTGGTTCTTGTCCATGCTTCTCTTGAACATTGCAGCTACTGTATTTATATGTGAATTCT ACAAAGATCAGCTCCAATTACCTTGGTGGGGCGTGCTGCTAGCCTGTGGCCTTGCTTTCTTCTTCACTCTTCCTGTTGGAATCATTACCGCTACAACAAA TCAGACTCCCGGCCTTAATGTGATAACAGAGTTCGTGATCGGGTATCTATACCCAGGATTCCCGGTTGCTAACGTATGCTTCAAAGTGTACGGATACATC AGCATGAAACAGGGGATCCTGTTTCTCCAAGACTTCAAACTCGGCCACTACATGAAGATCCCTCCTAGAGACATGTTCATGTCCCAAGTGGTTGGTGCAG TAATAGCAGCATTTGCACACTTAGGAACAGCATGGTGGTTAATGCGCACAATTCCGAACATTTGCGACCGGTCCTTGCTTCCATCGGACAGTCCATGGAC ATGTCCGGGCGACCACGTCTTCTACGACGCATCGGTCATCTGGGGTTTGATCGGTCCACGCAGAATATTCGGAGACTTGGGGTACTACTCCGGAATCAAC TGGTTCTTCTTGGCCGGAGCGATTGCTCCTGTGTTGGTTTGGGTTGCACACAAGTGTTTCCCAAACCAGCATTGGATTAGACTTATCTCATTGCCGGTGA TTTTGAGCACCACCTTGAATATGCTACCTGGCACTGCGGTGAATTACACGAGTTGGGTGCTTGTTGGGTTTGCGTCGGGGTTTGTTGCTTACAGATACTA CCGTGAGTGGTGGAGCCGTCACAACTATGTGCTGTCGGGATCGCTTGATGCTGGGTTGGCTTTCATGGCGGTACTGCTGTACTTGTGCTTGGGAATGCAG CACATTGGACTTGAGTGGTGGGGGAATGATTCCGATGGGTGCCCATTGGCTTCTTGCCCAACTGCTCCAGGAGTTGGTGCTAAAGGGTGTCCGCTTTCCT GA
AA sequence Show only first row Show all	>Lus10028445 pacid=23166005 polypeptide=Lus10028445 locus=Lus10028445.g ID=Lus10028445.BGIv1.0 annot-version=v1.0 MDPRRSRLPPLIIPQPVLLEPEGAALTGNPYAIHIVSAVKLFYKKELTFFVALLVVLTTQVLGFGWAGIFRRYLVEPAAMWWPQNLVQVSLFRALHEKED RRKGGVTRTQFFIIAFICSFAYYVFPDYLFSKLSSFSWVCWVFPASILVHQLGSGYRGLGIGALGFDWATVSAYLGSPLASPWFATANVAVGFGMFMYVI TPLAYWLDVYRAKTFPIFSDGLFRADGQDYNISAIVDSNFHIDVGAYKQQGPLYLSTVFAMVYGCNFACLTATIVHVFLFHGRDIWELSKSAFQEKQMDV HTKLMRKYKQVPEWWFLSMLLLNIAATVFICEFYKDQLQLPWWGVLLACGLAFFFTLPVGIITATTNQTPGLNVITEFVIGYLYPGFPVANVCFKVYGYI SMKQGILFLQDFKLGHYMKIPPRDMFMSQVVGAVIAAFAHLGTAWWLMRTIPNICDRSLLPSDSPWTCPGDHVFYDASVIWGLIGPRRIFGDLGYYSGIN WFFLAGAIAPVLVWVAHKCFPNQHWIRLISLPVILSTTLNMLPGTAVNYTSWVLVGFASGFVAYRYYREWWSRHNYVLSGSLDAGLAFMAVLLYLCLGMQ HIGLEWWGNDSDGCPLASCPTAPGVGAKGCPLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10028445 [exp]	0	1
AT2G37570		SLT1	sodium- and lithium-tolerant 1...		Lus10024406 [exp]	1.4	0.8570
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10019444 [exp]	2.0	0.8023
AT5G13550		SULTR4;1	sulfate transporter 4.1 (.1)		Lus10040319 [exp]	3.7	0.8289
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10028546 [exp]	4.9	0.7960
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10038492 [exp]	6.3	0.7990
					Lus10022348 [exp]	7.0	0.7952
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10008439 [exp]	11.4	0.7783
AT5G47740			Adenine nucleotide alpha hydro...		Lus10002238 [exp]	12.0	0.8146
AT4G32920			glycine-rich protein (.1.2.3)		Lus10000229 [exp]	12.2	0.7384
AT1G67570			Protein of unknown function (D...		Lus10006430 [exp]	12.5	0.7797

Compare expression of checked genes

Lus10028445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.