Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35987 402 / 9e-142 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G26810 57 / 3e-09 Putative methyltransferase family protein (.1.2.3) AT5G27400 55 / 2e-08 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G27410 56 / 3e-08 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) AT1G63855 47 / 2e-06 Putative methyltransferase family protein (.1.2.3) AT3G50850 47 / 5e-06 Putative methyltransferase family protein (.1) AT1G08125 46 / 2e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT2G26200 44 / 0.0001 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041898 [exp] 387 / 9e-131 AT5G13700 349 / 2e-113 polyamine oxidase 1 (.1) Lus10041869 [exp] 55 / 2e-08 AT1G63855 255 / 8e-87 Putative methyltransferase family protein (.1.2.3) Lus10024993 [exp] 54 / 9e-08 AT2G26200 726 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028415 [exp] 52 / 1e-07 AT1G63855 248 / 2e-84 Putative methyltransferase family protein (.1.2.3) Lus10015166 [exp] 52 / 2e-07 AT5G27400 377 / 9e-131 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10031516 [exp] 50 / 1e-06 AT5G27400 364 / 1e-125 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10021425 [exp] 44 / 0.0001 AT1G08125 385 / 2e-135 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G057000 [exp] 431 / 3e-153 AT4G35987 410 / 5e-145 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G039000 [exp] 52 / 2e-07 AT5G27400 361 / 6e-123 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G109000 [exp] 50 / 7e-07 AT1G63855 261 / 5e-89 Putative methyltransferase family protein (.1.2.3) Potri.007G025600 [exp] 50 / 7e-07 AT5G49560 289 / 2e-98 Putative methyltransferase family protein (.1) Potri.009G068400 [exp] 48 / 3e-06 AT2G26810 345 / 2e-121 Putative methyltransferase family protein (.1.2.3) Potri.001G148200 [exp] 47 / 7e-06 AT5G44170 46 / 7e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.006G225600 [exp] 45 / 6e-05 AT2G26200 739 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.009G006800 [exp] 44 / 6e-05 AT1G08125 370 / 4e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF10294 [flax] [poplar] Methyltransf_16 Lysine methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10028446 pacid=23166186 polypeptide=Lus10028446 locus=Lus10028446.g ID=Lus10028446.BGIv1.0 annot-version=v1.0 ATGGAACAAGAAAGCGGAAAAAGCTTTAGAGCATCGTCTGTCAGATGGGAGATCCTTCGTCAAGCTCTTCTCCACCGTCGCTCTGCGCTGCCGAATTCCG ATGAGCGATCTCCAAGCTCCATTAACCGAATTTCCAGGAAGGCCACCCACGGGTTCAACTTGATACCCAGGCAAATGGTAGAAGCTGGCGATGAGCAATC TTCGAATTCGAGAGATGCTCGTATATGCTACACTCTACCCATTGATGGAGCGCCCAAGATTTTGCTCACTCAACGAGTGGATACTGGGGCTGACCTCAGA GACTTTGAGATATCTAATAGAAACAATGTTGACACAACTGGGCTCGTTTGTCATTGGCCATCAGAAGATGTCCTTGCTTACTATTGTTTGTCTCGTGTAG ATATGTTCAGATCTAAAAGGGTTATCGAGCTTGGGGCAGGCTATGGCCTAGCTGGATTAGTCATAGCAGCTATTAGTGAGGCATCTGAAGTTGTAATCTC TGATGGAAACCCTCAGGTGGTTGATTATATTCAGCGTAACATAGATGCCAACTCTGGAGCATTTGGTGGAACAAAAGTCAAGGCTATGACACTTCATTGG GGTGTAGAGGTAGCATCACATATGTCCAACTCATTTGATGTCATCGTTGCTAGTGATTGTACCTTTTTTAAGGACTTCCACAAAAGCCTTGCTTCAGCTG TCAAACTCCTCTTGAGAAATGAAAGCACCTCAGAAGCAATCTTCATCAGCCCCCAAAGAGGAGACTCTTTAAACAAGTTTCTACACATAGTTGAAGAGAC CGGGCTGCATTTCTCCGTAACAGAAAACTACGATGCAGAAGTTTCGAAACGTCATCTTGTGTTCGAAAATGGCGTGGATGACTCGTGGCCGAGCTATACT AAAGATCACAGCTACCCATTACTGGTCAGAATTACATTATGA
AA sequence Show only first row Show all	>Lus10028446 pacid=23166186 polypeptide=Lus10028446 locus=Lus10028446.g ID=Lus10028446.BGIv1.0 annot-version=v1.0 MEQESGKSFRASSVRWEILRQALLHRRSALPNSDERSPSSINRISRKATHGFNLIPRQMVEAGDEQSSNSRDARICYTLPIDGAPKILLTQRVDTGADLR DFEISNRNNVDTTGLVCHWPSEDVLAYYCLSRVDMFRSKRVIELGAGYGLAGLVIAAISEASEVVISDGNPQVVDYIQRNIDANSGAFGGTKVKAMTLHW GVEVASHMSNSFDVIVASDCTFFKDFHKSLASAVKLLLRNESTSEAIFISPQRGDSLNKFLHIVEETGLHFSVTENYDAEVSKRHLVFENGVDDSWPSYT KDHSYPLLVRITL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35987			S-adenosyl-L-methionine-depend...		Lus10028446 [exp]	0	1
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Lus10003496 [exp]	1.7	0.8628
AT1G07290		GONST2	golgi nucleotide sugar transpo...		Lus10001205 [exp]	4.0	0.8301
AT3G14400		UBP25	ubiquitin-specific protease 25...		Lus10005591 [exp]	5.1	0.8541
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Lus10043147 [exp]	6.7	0.8284
AT4G30900			DNAse I-like superfamily prote...		Lus10022154 [exp]	6.9	0.8340
AT5G05310			TLC ATP/ADP transporter (.1.2....		Lus10012891 [exp]	7.5	0.8418
AT5G42470			unknown protein		Lus10033139 [exp]	7.9	0.7922
AT1G53710			Calcineurin-like metallo-phosp...		Lus10042935 [exp]	7.9	0.8055
AT3G07570			Cytochrome b561/ferric reducta...		Lus10012305 [exp]	8.1	0.8229
AT1G07990			SIT4 phosphatase-associated fa...		Lus10037400 [exp]	8.1	0.8407

Compare expression of checked genes

Lus10028446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.