Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38660 340 / 2e-116 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G24180 328 / 5e-113 ATTLP1 THAUMATIN-LIKE PROTEIN 1 (.1) AT1G20030 289 / 6e-97 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75800 280 / 5e-93 Pathogenesis-related thaumatin superfamily protein (.1) AT1G19320 266 / 6e-89 Pathogenesis-related thaumatin superfamily protein (.1) AT2G17860 259 / 6e-86 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75030 259 / 6e-86 ATLP-3 thaumatin-like protein 3 (.1) AT1G75040 257 / 2e-85 PR-5, PR5 pathogenesis-related gene 5 (.1) AT4G36010 257 / 1e-84 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75050 254 / 2e-84 Pathogenesis-related thaumatin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041899 [exp] 489 / 3e-175 AT4G38660 363 / 2e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10025055 [exp] 325 / 1e-111 AT4G38660 359 / 6e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10013561 [exp] 325 / 5e-111 AT4G38660 326 / 2e-112 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10017266 [exp] 316 / 2e-107 AT4G24180 322 / 7e-111 THAUMATIN-LIKE PROTEIN 1 (.1) Lus10017265 [exp] 274 / 1e-90 AT1G75800 390 / 2e-136 Pathogenesis-related thaumatin superfamily protein (.1) Lus10028448 [exp] 261 / 2e-86 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10034534 [exp] 260 / 2e-85 AT1G75800 376 / 5e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10033136 [exp] 257 / 4e-84 AT1G75800 375 / 8e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10041901 [exp] 256 / 4e-84 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G112600 [exp] 399 / 7e-140 AT4G38660 348 / 2e-119 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.009G132500 [exp] 366 / 1e-126 AT4G38660 338 / 3e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.004G173200 [exp] 360 / 1e-124 AT4G38660 357 / 5e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G241000 [exp] 348 / 8e-120 AT4G24180 348 / 5e-121 THAUMATIN-LIKE PROTEIN 1 (.1) Potri.002G020400 [exp] 345 / 7e-119 AT4G38660 357 / 2e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G240900 [exp] 284 / 7e-95 AT1G75800 398 / 7e-140 Pathogenesis-related thaumatin superfamily protein (.1) Potri.002G020500 [exp] 281 / 1e-93 AT1G75800 404 / 7e-142 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G112700 [exp] 274 / 2e-91 AT4G36010 372 / 3e-130 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.009G132200 [exp] 265 / 1e-87 AT4G38670 410 / 2e-145 Pathogenesis-related thaumatin superfamily protein (.1.2.3) Potri.001G221900 [exp] 245 / 1e-80 AT1G75800 271 / 5e-91 Pathogenesis-related thaumatin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Lus10028447 pacid=23166075 polypeptide=Lus10028447 locus=Lus10028447.g ID=Lus10028447.BGIv1.0 annot-version=v1.0 ATGGCTGCCTCACATTTCTTCACCTGTGTCCTCACCCTTCTCTTACTATCATCCAAAGGTGTATCGCCCGCGACGTTTACATTTGTCAATAAATGTGACT ACACGGTCTGGGCGGGAATTCTCGGCACGCCGAAGTTGGACAGCACTGGATTTGAACTCCTCAAGGGAACTTCACGTTCTTTCCAAGCTCCCACCGGTTG GTCGGGCCGATTCTGGGGGCGGACGGGATGCAATTTCGACGGTTCCGGCCAAGGTACTTGCGCCACCGCCGACTGCGGCTCCGGCCAGATCGAATGCAAC GGGGCCGGCGCCAATCCACCGGCGACCTTGGCTGAGTTCACTCTCGGATCCGGTTCCCAGGATTTCTACGATGTGAGCCTGGTCGACGGATACAACGTGC AGATGATTGTGGAGGCCAGCGGCGGATCCGGCAACTGCGCTTCCACCGGGTGCGTGACGGATCTCAACCGGAAGTGCCCGTCGGAGCTGAAGGTGGACGG CGGATCCGCGTGTCGGAGCGCCTGCGAGGCGTTCGGGAACCCGGAGTACTGCTGCAGCGGCGCGTACAATACACCGGCGACGTGTAAGCCGTCGATGTAC TCGGAGATGTTCAAGAGCGCGTGCCCTAAGTCATATAGCTACGCTTACGACGACGCCACTAGTACTTTCACTTGCACCGCCGCCGATTACACCATCACAT TTTGTCCCAGTTTACCCAGCTTGAAGTCATCAAGTGATTCGTCGCCGCCGAAGGCTACTACATCAACGCCGGCGGCAGGAAACGGGCCAGGAGGAGGATC AGCGGCAGCGTCAGGGGCGATGGGAGGGACGGTGAATCAGCCGCAGCCGTATGCAGAGACGGTACAGGGAGCCGGCATGGGGGATCCTTGGCTAGCAAGT ATGGCTACCGGAGATTCAGCCTCAGCATCATCAGCTTCTCAATTGCTCTTCAGGGTGGAATTCTTTTGA
AA sequence Show only first row Show all	>Lus10028447 pacid=23166075 polypeptide=Lus10028447 locus=Lus10028447.g ID=Lus10028447.BGIv1.0 annot-version=v1.0 MAASHFFTCVLTLLLLSSKGVSPATFTFVNKCDYTVWAGILGTPKLDSTGFELLKGTSRSFQAPTGWSGRFWGRTGCNFDGSGQGTCATADCGSGQIECN GAGANPPATLAEFTLGSGSQDFYDVSLVDGYNVQMIVEASGGSGNCASTGCVTDLNRKCPSELKVDGGSACRSACEAFGNPEYCCSGAYNTPATCKPSMY SEMFKSACPKSYSYAYDDATSTFTCTAADYTITFCPSLPSLKSSSDSSPPKATTSTPAAGNGPGGGSAAASGAMGGTVNQPQPYAETVQGAGMGDPWLAS MATGDSASASSASQLLFRVEFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38660			Pathogenesis-related thaumatin...		Lus10028447 [exp]	0	1
AT1G55110	C2H2ZnF	ARABIDOPSISTHAL...	indeterminate(ID)-domain 7 (.1...		Lus10029904 [exp]	2.4	0.9007
AT3G54390	Trihelix		sequence-specific DNA binding ...		Lus10024143 [exp]	2.4	0.9039
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10007774 [exp]	3.5	0.8958
AT2G17230		EXL5	EXORDIUM like 5 (.1)		Lus10013834 [exp]	3.7	0.8896
AT4G16370		ATOPT3	oligopeptide transporter (.1)		Lus10038784 [exp]	4.9	0.8876
AT5G67350			unknown protein		Lus10010401 [exp]	5.0	0.8913
AT5G10530			Concanavalin A-like lectin pro...		Lus10007076 [exp]	5.1	0.8832
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10002829 [exp]	5.2	0.8865
AT5G25280			serine-rich protein-related (....		Lus10038100 [exp]	6.0	0.8935
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Lus10011713 [exp]	7.3	0.8905

Compare expression of checked genes

Lus10028447 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.