Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36010 332 / 1e-114 Pathogenesis-related thaumatin superfamily protein (.1.2) AT2G17860 310 / 9e-107 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75800 312 / 3e-106 Pathogenesis-related thaumatin superfamily protein (.1) AT1G20030 309 / 2e-105 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G38670 305 / 3e-104 Pathogenesis-related thaumatin superfamily protein (.1.2.3) AT4G24180 269 / 2e-90 ATTLP1 THAUMATIN-LIKE PROTEIN 1 (.1) AT4G38660 268 / 5e-89 Pathogenesis-related thaumatin superfamily protein (.1.2) AT5G38280 267 / 1e-84 PR5K PR5-like receptor kinase (.1) AT1G18250 251 / 2e-83 ATLP-1 Pathogenesis-related thaumatin superfamily protein (.1.2) AT5G24620 256 / 3e-83 Pathogenesis-related thaumatin superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041901 [exp] 468 / 5e-168 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10034534 [exp] 307 / 2e-104 AT1G75800 376 / 5e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10017265 [exp] 304 / 3e-103 AT1G75800 390 / 2e-136 Pathogenesis-related thaumatin superfamily protein (.1) Lus10033136 [exp] 303 / 4e-103 AT1G75800 375 / 8e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10013561 [exp] 294 / 2e-99 AT4G38660 326 / 2e-112 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10017266 [exp] 292 / 1e-98 AT4G24180 322 / 7e-111 THAUMATIN-LIKE PROTEIN 1 (.1) Lus10023897 [exp] 271 / 2e-91 AT1G75800 271 / 8e-91 Pathogenesis-related thaumatin superfamily protein (.1) Lus10036435 [exp] 285 / 3e-90 AT4G38670 417 / 7e-139 Pathogenesis-related thaumatin superfamily protein (.1.2.3) Lus10041899 [exp] 260 / 8e-86 AT4G38660 363 / 2e-125 Pathogenesis-related thaumatin superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G112700 [exp] 366 / 4e-128 AT4G36010 372 / 3e-130 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.002G020500 [exp] 316 / 4e-108 AT1G75800 404 / 7e-142 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G240900 [exp] 308 / 4e-105 AT1G75800 398 / 7e-140 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G241000 [exp] 297 / 2e-100 AT4G24180 348 / 5e-121 THAUMATIN-LIKE PROTEIN 1 (.1) Potri.009G132200 [exp] 293 / 3e-99 AT4G38670 410 / 2e-145 Pathogenesis-related thaumatin superfamily protein (.1.2.3) Potri.002G020400 [exp] 288 / 3e-97 AT4G38660 357 / 2e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.004G173200 [exp] 272 / 2e-90 AT4G38660 357 / 5e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.009G132500 [exp] 271 / 3e-90 AT4G38660 338 / 3e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.004G014574 [exp] 265 / 8e-89 AT1G75800 294 / 8e-100 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221100 [exp] 264 / 1e-88 AT1G75800 277 / 2e-93 Pathogenesis-related thaumatin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Lus10028448 pacid=23166145 polypeptide=Lus10028448 locus=Lus10028448.g ID=Lus10028448.BGIv1.0 annot-version=v1.0 ATGGCTCTCTCAATTCCCTTAATCTTCTTCTTCATTCTTCCTCTCCTGACTTCCCATTCCTCCGCCGCCACATTCACCATCGCCAACAACTGCAATTACC CCATCTGGCCGGGGATCCTCTCCAGCGCTGGCACTGCTCAGCTCTCCACCACCGGATTCCTCCTCCAGCCCTCTCAATCCTCCGTCCTCGACTTCCCACC CGCCTGGTCCGGCCGCCTCTGGGCCCGCACTCTATGCACAACCGACCCAACCACCAACAAATTCACCTGCCTCACCGGCGACTGTGGCTCCGGCACCCTC GAATGCTCCGGAGGCGGCGCCTCCCCTCCCGCCACCCTAGCAGAATTCACCCTCAACGGCGCCGAATCCAAGGACTTCTACGACGTCAGCCTTGTCGACG GCTACAACCTCCCCATGCTCATTACCCCGCAGGGCGGCGACGGCAACTGCACAGTCACCGGGTGCGTGGTGGAGCTGAACGGCGCGTGTCCTTCGGAGCT GAAAGTGATGGACGCGCAGAACGGCAGGAGCGTGGCCTGCAAGAGTGCGTGTGACGCGTTTGGGGACCCGCAGTATTGCTGTAGCGGGGAGTTCGGCACG CCAGACACGTGTAAGCCGAGTACCTACTCAGAGTTCTTTAAAAATGCGTGCCCCAGGGCTTACAGTTACGCCTACGACGACGGAACCAGTACCTTCACTT GCTCCTCCGGCAACGATTACGTTGTCACCTTCTGCCCTTCTTCTACCCCTAGCAACTCTTCTTTCGTCGATTTGGAGGCGGTTGCTAGGATGAAAAAATC TAGCTGTCAGGTTGTTTATAATTTTGCCGTAACTGAACTCTTCTTCTCCGATTTGGCTGCTAGCTAA
AA sequence Show only first row Show all	>Lus10028448 pacid=23166145 polypeptide=Lus10028448 locus=Lus10028448.g ID=Lus10028448.BGIv1.0 annot-version=v1.0 MALSIPLIFFFILPLLTSHSSAATFTIANNCNYPIWPGILSSAGTAQLSTTGFLLQPSQSSVLDFPPAWSGRLWARTLCTTDPTTNKFTCLTGDCGSGTL ECSGGGASPPATLAEFTLNGAESKDFYDVSLVDGYNLPMLITPQGGDGNCTVTGCVVELNGACPSELKVMDAQNGRSVACKSACDAFGDPQYCCSGEFGT PDTCKPSTYSEFFKNACPRAYSYAYDDGTSTFTCSSGNDYVVTFCPSSTPSNSSFVDLEAVARMKKSSCQVVYNFAVTELFFSDLAAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36010			Pathogenesis-related thaumatin...		Lus10028448 [exp]	0	1
AT4G40080			ENTH/ANTH/VHS superfamily prot...		Lus10023837 [exp]	5.9	0.7997
AT5G43980		PDLP1, PDLP1A	PLASMODESMATA-LOCATED PROTEIN ...		Lus10001052 [exp]	6.9	0.7994
AT4G36010			Pathogenesis-related thaumatin...		Lus10041901 [exp]	17.7	0.7616
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10022636 [exp]	23.9	0.7992
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Lus10007272 [exp]	27.9	0.7869
AT5G43980		PDLP1, PDLP1A	PLASMODESMATA-LOCATED PROTEIN ...		Lus10001418 [exp]	28.0	0.7701
AT5G54400			S-adenosyl-L-methionine-depend...		Lus10038599 [exp]	28.4	0.7358
AT1G31720			Protein of unknown function (D...		Lus10037256 [exp]	28.5	0.7683
AT2G18540			RmlC-like cupins superfamily p...		Lus10041722 [exp]	29.2	0.7591
AT2G17230		EXL5	EXORDIUM like 5 (.1)		Lus10013834 [exp]	31.0	0.7721

Compare expression of checked genes

Lus10028448 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.