Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36020 120 / 2e-32 CSDP1 cold shock domain protein 1 (.1) AT2G17870 117 / 3e-31 ATCSP3 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) AT3G42860 70 / 1e-13 zinc knuckle (CCHC-type) family protein (.1) AT2G21060 65 / 2e-12 ATCSP4, ATGRP2B COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) AT1G75560 56 / 4e-09 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2) AT4G38680 49 / 4e-07 ATCSP2, CSDP2, GRP2 COLD SHOCK DOMAIN PROTEIN 2, ARABIDOPSIS THALIANA COLD SHOCK PROTEIN 2, glycine rich protein 2 (.1) AT5G52380 47 / 3e-06 VASCULAR-RELATED NAC-DOMAIN 6 (.1) AT3G43590 47 / 1e-05 zinc knuckle (CCHC-type) family protein (.1) AT3G53500 45 / 2e-05 RSZ32, RS2Z32, At-RS2Z arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) AT2G37340 44 / 6e-05 RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041902 [exp] 310 / 2e-107 AT4G36020 159 / 2e-47 cold shock domain protein 1 (.1) Lus10028073 [exp] 76 / 2e-16 AT4G36020 115 / 3e-31 cold shock domain protein 1 (.1) Lus10025058 [exp] 70 / 2e-15 AT2G21060 112 / 6e-33 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Lus10005066 [exp] 61 / 2e-11 AT2G17870 122 / 1e-35 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Lus10027839 [exp] 61 / 2e-11 AT2G21060 110 / 6e-31 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Lus10012906 [exp] 60 / 2e-10 AT3G42860 184 / 1e-54 zinc knuckle (CCHC-type) family protein (.1) Lus10025623 [exp] 57 / 4e-10 ND 81 / 8e-20 Lus10034487 [exp] 57 / 5e-10 AT2G21060 110 / 7e-31 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Lus10030560 [exp] 57 / 3e-09 AT3G42860 258 / 1e-82 zinc knuckle (CCHC-type) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G112800 [exp] 192 / 5e-61 AT2G17870 86 / 1e-19 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Potri.007G057100 [exp] 179 / 9e-56 AT4G36020 127 / 3e-35 cold shock domain protein 1 (.1) Potri.009G132000 [exp] 75 / 5e-16 AT2G21060 103 / 1e-27 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Potri.004G172600 [exp] 74 / 9e-16 AT2G21060 102 / 3e-27 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Potri.002G086900 [exp] 67 / 2e-13 AT2G17870 89 / 2e-21 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Potri.005G174300 [exp] 63 / 5e-12 AT2G17870 92 / 1e-22 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Potri.005G234700 [exp] 58 / 1e-09 AT1G75560 278 / 2e-94 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2) Potri.004G161800 [exp] 57 / 2e-09 AT1G75560 273 / 2e-92 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2) Potri.009G155500 [exp] 53 / 8e-08 AT3G43590 286 / 9e-89 zinc knuckle (CCHC-type) family protein (.1) Potri.012G141700 [exp] 48 / 2e-06 AT5G52380 250 / 6e-83 VASCULAR-RELATED NAC-DOMAIN 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF00313 [flax] [poplar] CSD 'Cold-shock' DNA-binding domain CL0511 [flax] [poplar] Retroviral_zf PF00098 [flax] [poplar] zf-CCHC Zinc knuckle
Representative CDS sequence Show only first row Show all	>Lus10028449 pacid=23166123 polypeptide=Lus10028449 locus=Lus10028449.g ID=Lus10028449.BGIv1.0 annot-version=v1.0 ATGGCGGAAGATCAGTCAGTTAGATCTTCATCCACAGTGAGGACCACCGGCAAGGTCGTCAAGTTCAGCGACAAGAAGGGTTTCGGCTTCATCAAGCCCA ACGATGGCAGCGACGACTTGTTCGTCCATCACACCGCGATCAAGTCCGACGGCGGGTACCGCACCCTCACTGAGGAAGATGTAGTCGAGTTCGAAGTAGC CGAGACTGACGGCAAGTGCCAGGCTATCAACGTCACTGCTCCCGGCGGAGGTGCGATTCAGGCGGGGAAACGAGGCGGAGGGGACGGTTACGGCAGGCGC GGTGCGGGATCCGGAGCGCCGTGGAACAGGCGGAGCAACGGCGGCGGGTGTTACACCTGCGGAAACCCTAACCACATCGCGAGGGAGTGCAACAGTCGCA GCGAGAGCGTAGGCAGCTGCTTCAAGTGTGGGACCGCTGGGCATTTTGCTCGGGACTGTCCGCAGGCCGTTAACGGCCGTGGTGGCGGAGGAGTTGGCGG AGGAGCTGCTGGTGTGGCTTGCTTTAGCTGCAGTGGATTCGGACACTTGGCTAGGGATTGTCCAGGCGGCAGCGGACCTTGCTACAACTGTGGGGGTCAT GGACACTTCGCTAGAGATTGTACCAGCGCTAGGAGCGTGGGCGGTGGCGGTGGTGGCGGCAACAGGGTTGGGTCTAACAGTGCTTGCTTCAATTGCGGGA AGCTAGGACACTTTGCAAGGGATTGTACCAACCCTGACTTTTGA
AA sequence Show only first row Show all	>Lus10028449 pacid=23166123 polypeptide=Lus10028449 locus=Lus10028449.g ID=Lus10028449.BGIv1.0 annot-version=v1.0 MAEDQSVRSSSTVRTTGKVVKFSDKKGFGFIKPNDGSDDLFVHHTAIKSDGGYRTLTEEDVVEFEVAETDGKCQAINVTAPGGGAIQAGKRGGGDGYGRR GAGSGAPWNRRSNGGGCYTCGNPNHIARECNSRSESVGSCFKCGTAGHFARDCPQAVNGRGGGGVGGGAAGVACFSCSGFGHLARDCPGGSGPCYNCGGH GHFARDCTSARSVGGGGGGGNRVGSNSACFNCGKLGHFARDCTNPDF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36020		CSDP1	cold shock domain protein 1 (....		Lus10028449 [exp]	0	1
AT4G38710			glycine-rich protein (.1.2)		Lus10012166 [exp]	1.4	0.8476
AT3G63170			Chalcone-flavanone isomerase f...		Lus10022045 [exp]	2.6	0.8227
AT4G36020		CSDP1	cold shock domain protein 1 (....		Lus10041902 [exp]	2.8	0.8906
AT5G13890			Family of unknown function (DU...		Lus10041505 [exp]	6.9	0.8426
AT1G29330		ATERD2, AERD2, ...	ARABIDOPSIS THALIANA ENDOPLASM...		Lus10007314 [exp]	6.9	0.7635
AT5G13450		ATP5	delta subunit of Mt ATP syntha...		Lus10016414 [exp]	11.2	0.8080
AT1G27970		NTF2B	nuclear transport factor 2B (....		Lus10037033 [exp]	11.5	0.8331
AT2G27260			Late embryogenesis abundant (L...		Lus10043411 [exp]	11.6	0.8323
AT5G06660			Protein of unknown function DU...		Lus10016235 [exp]	12.3	0.8200
AT3G57560		NAGK	N-acetyl-l-glutamate kinase (....		Lus10030889 [exp]	12.6	0.8005

Compare expression of checked genes

Lus10028449 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.