Plant FIBer expression Database

Lus10028450 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G23940 230 / 5e-78 Protein of unknown function (DUF788) (.1)
AT4G30500 208 / 2e-69 Protein of unknown function (DUF788) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041903
[exp]
278 / 3e-97 AT2G23940 295 / 1e-103 Protein of unknown function (DUF788) (.1)
Lus10010382
[exp]
55 / 4e-10 ND 52 / 1e-09
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G101100
[exp]
244 / 6e-84 AT2G23940 228 / 4e-77 Protein of unknown function (DUF788) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05620 TMEM208_SND2 SRP-independent targeting protein 2/TMEM208
Representative CDS sequence
>Lus10028450 pacid=23166067 polypeptide=Lus10028450 locus=Lus10028450.g ID=Lus10028450.BGIv1.0 annot-version=v1.0
ATGGCGAATCAGGGAGCTAAGAAGCGCAAGGAAGAGAACTCCCGCCACATGGCTAATCTCCGTCGCATCATCATCGCATGCAATGGTATATATGTGTTGG
TGAGGATGCTGATATTCCATTCGAGTTTCACATGGAAGCACTGGATTGGCTTGGTATTGACTTCTCTAGCATATTACTTTCCTTACCAACAACTTGCTTC
CATGGCCAAACCTAGCTATGGAGATGATGGGGAGCTTTTCGATGGTGGTTTTGATATGAGCACTACTGGGATTTGTGGATATCTTCATGATGTTATCTAC
ATCACAAGCTTTGTGCAGATTGCATCCATTCTGTCTGATAAGTTTTGGTACACATATCTTGTGATCCCGGCATTTGGAGCATACAAGTCGTATGGGTTGA
TCAAAGGATTCTTGCCACAAGGTTCAGAGGGAGGCGAGGAGGATGAAAAGACTCGTAAGAAGAGAGAAAAGATGGAGAAGAAAGCTTCACGGGGCAAGTT
CGTCAAGACAAAAACCAGATGA
AA sequence
>Lus10028450 pacid=23166067 polypeptide=Lus10028450 locus=Lus10028450.g ID=Lus10028450.BGIv1.0 annot-version=v1.0
MANQGAKKRKEENSRHMANLRRIIIACNGIYVLVRMLIFHSSFTWKHWIGLVLTSLAYYFPYQQLASMAKPSYGDDGELFDGGFDMSTTGICGYLHDVIY
ITSFVQIASILSDKFWYTYLVIPAFGAYKSYGLIKGFLPQGSEGGEEDEKTRKKREKMEKKASRGKFVKTKTR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G23940 Protein of unknown function (D... Lus10028450
[exp]
0 1
AT3G62450 unknown protein Lus10021958
[exp]
3.0 0.8876
AT4G10920 KELP transcriptional coactivator p1... Lus10023061
[exp]
3.3 0.9143
AT1G69010 bHLH bHLH102, BIM2 BES1-interacting Myc-like prot... Lus10005091
[exp]
4.5 0.9099
AT1G76200 unknown protein Lus10012279
[exp]
4.9 0.8902
AT4G20330 Transcription initiation facto... Lus10029563
[exp]
5.5 0.8937
AT4G16770 2-oxoglutarate (2OG) and Fe(II... Lus10004746
[exp]
7.5 0.8906
AT5G53530 VPS26A vacuolar protein sorting 26A (... Lus10037421
[exp]
7.5 0.8938
AT1G15860 Domain of unknown function (DU... Lus10026216
[exp]
9.0 0.8949
AT1G09920 TRAF-type zinc finger-related ... Lus10028213
[exp]
9.8 0.8687
AT5G09830 BolA-like family protein (.1) Lus10020861
[exp]
9.8 0.8803

Lus10028450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.